Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   G8D99_RS13680 Genome accession   NZ_CP049916
Coordinates   3007982..3008401 (-) Length   139 a.a.
NCBI ID   WP_166326832.1    Uniprot ID   -
Organism   Acinetobacter lanii strain 185     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3002982..3013401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8D99_RS13650 (G8D99_13650) - 3003417..3004382 (+) 966 WP_166326822.1 triacylglycerol lipase -
  G8D99_RS13655 (G8D99_13655) - 3004656..3005630 (+) 975 WP_406741525.1 esterase/lipase family protein -
  G8D99_RS13660 (G8D99_13660) rplS 3005703..3006077 (-) 375 WP_166326826.1 50S ribosomal protein L19 -
  G8D99_RS13665 (G8D99_13665) trmD 3006219..3006959 (-) 741 WP_166326828.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  G8D99_RS13670 (G8D99_13670) rimM 3007005..3007553 (-) 549 WP_166326830.1 ribosome maturation factor RimM -
  G8D99_RS13675 (G8D99_13675) rpsP 3007581..3007838 (-) 258 WP_068912833.1 30S ribosomal protein S16 -
  G8D99_RS13680 (G8D99_13680) comF 3007982..3008401 (-) 420 WP_166326832.1 type IV pilin protein Machinery gene
  G8D99_RS13685 (G8D99_13685) - 3008401..3008961 (-) 561 WP_166326834.1 type IV pilin protein -
  G8D99_RS13690 (G8D99_13690) - 3008969..3012982 (-) 4014 WP_166326836.1 pilus assembly protein -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15454.71 Da        Isoelectric Point: 6.9471

>NTDB_id=428647 G8D99_RS13680 WP_166326832.1 3007982..3008401(-) (comF) [Acinetobacter lanii strain 185]
MKENAFTLIELMIVVAIIGVLAAISYPSYQSYIVRTERVDVQTELMQIAQNLQRYALMKHSFNDASLDNGSLQQIYPLSG
KAKYTIALDLDASGQSWTLTATPLQAKRGVVKLDSEGRKCWIASTTACELSFTSNWDGR

Nucleotide


Download         Length: 420 bp        

>NTDB_id=428647 G8D99_RS13680 WP_166326832.1 3007982..3008401(-) (comF) [Acinetobacter lanii strain 185]
ATGAAAGAAAACGCTTTTACGCTGATTGAATTGATGATCGTGGTTGCCATTATTGGTGTTCTTGCTGCTATCTCATATCC
AAGTTACCAAAGCTATATAGTTCGAACAGAGCGTGTAGATGTACAAACTGAACTGATGCAAATTGCACAAAATTTACAAC
GTTATGCATTGATGAAACATAGCTTCAATGATGCAAGTTTGGATAATGGCTCATTGCAACAAATCTATCCACTATCGGGT
AAAGCAAAATATACAATTGCACTTGACCTAGATGCATCAGGTCAAAGTTGGACTCTAACAGCGACGCCATTGCAAGCAAA
ACGCGGTGTAGTCAAACTTGATAGTGAGGGTCGAAAATGTTGGATTGCATCAACAACAGCTTGTGAATTGAGTTTTACAT
CCAATTGGGATGGCCGATAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(27-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

49.645

100

0.504
  pilE Acinetobacter baumannii D1279779

42.657

100

0.439