Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   G7083_RS06945 Genome accession   NZ_CP049913
Coordinates   1422619..1423479 (-) Length   286 a.a.
NCBI ID   WP_240911935.1    Uniprot ID   -
Organism   Vibrio sp. HDW18     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1417619..1428479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7083_RS06915 (G7083_06915) gspL 1417719..1418930 (+) 1212 WP_166014112.1 type II secretion system protein GspL -
  G7083_RS06920 (G7083_06920) gspM 1418940..1419449 (+) 510 WP_166014113.1 type II secretion system protein GspM -
  G7083_RS06925 (G7083_06925) - 1419451..1420209 (+) 759 WP_166014114.1 type II secretion system protein N -
  G7083_RS06930 (G7083_06930) cysQ 1420284..1421123 (-) 840 WP_166014115.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  G7083_RS06935 (G7083_06935) nudE 1421257..1421820 (-) 564 WP_166014116.1 ADP compounds hydrolase NudE -
  G7083_RS06940 (G7083_06940) nfuA 1421945..1422532 (-) 588 WP_166014117.1 Fe-S biogenesis protein NfuA -
  G7083_RS06945 (G7083_06945) comF 1422619..1423479 (-) 861 WP_240911935.1 ComF family protein Machinery gene
  G7083_RS06950 (G7083_06950) bioH 1423415..1424176 (+) 762 WP_166015010.1 pimeloyl-ACP methyl ester esterase BioH -
  G7083_RS06955 (G7083_06955) - 1424299..1424769 (+) 471 WP_166014119.1 ATP-dependent Lon protease -
  G7083_RS06960 (G7083_06960) - 1424859..1427192 (-) 2334 WP_166014120.1 Tex family protein -
  G7083_RS06965 (G7083_06965) greB 1427451..1427933 (+) 483 WP_166014121.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32212.37 Da        Isoelectric Point: 8.6279

>NTDB_id=428602 G7083_RS06945 WP_240911935.1 1422619..1423479(-) (comF) [Vibrio sp. HDW18]
MPQPCTSTRSCPCPLTCQYNAMVTFSPSISIVITFASRQDKCNSQNYGAMMLIDWLRKTTALQLMAQCSLCRLALDTPNP
AGICTACQAWLAHGARCQRCGLPCLIAVEQCGQCLRQPPAWHTLICVGDYRFPLSDAVQQLKYQRQFWQAPRLAQLLAAQ
IEQPAPLLCSVPLHWRRRWQRGFNQSDLLARALARALATDYDHQLFSRRRATPQQQGLSKTERLNNLQDAFQLNHLPRAA
HVAIVDDVVTTGSTLRHLCALLLDAGVQRIDIYCLCRTPEPKERQP

Nucleotide


Download         Length: 861 bp        

>NTDB_id=428602 G7083_RS06945 WP_240911935.1 1422619..1423479(-) (comF) [Vibrio sp. HDW18]
ATCCCCCAGCCATGTACCAGCACCAGATCTTGCCCTTGTCCACTCACTTGCCAATACAACGCCATGGTCACATTTTCTCC
GTCTATTTCCATCGTTATCACTTTTGCCAGTCGGCAAGATAAGTGCAATTCCCAAAATTATGGAGCAATGATGTTAATCG
ATTGGCTGAGAAAAACCACTGCGCTACAGCTGATGGCACAATGCTCACTGTGTCGCTTGGCGCTCGATACTCCTAATCCA
GCGGGTATTTGCACCGCTTGCCAAGCATGGTTGGCACATGGTGCACGCTGTCAGCGCTGCGGCTTACCCTGTTTAATCGC
GGTCGAACAGTGTGGACAATGCCTACGCCAGCCGCCAGCGTGGCACACACTGATCTGCGTGGGAGATTATCGTTTTCCGC
TGAGTGATGCGGTACAGCAACTCAAATATCAGCGCCAATTTTGGCAAGCGCCGCGCCTCGCTCAGTTGCTGGCCGCTCAG
ATAGAGCAACCAGCACCATTATTGTGCAGCGTACCACTGCATTGGCGACGACGCTGGCAGCGCGGCTTTAATCAAAGTGA
TCTGCTGGCGCGAGCCTTAGCCCGCGCTTTAGCCACCGACTATGACCACCAACTGTTTAGCCGCCGCCGAGCCACACCGC
AACAGCAAGGGCTTAGCAAAACTGAGCGCCTCAATAATCTGCAAGATGCATTTCAGCTTAATCATCTGCCACGCGCAGCT
CATGTGGCAATTGTCGATGATGTGGTGACCACCGGCAGTACCCTTCGCCATTTATGTGCGTTACTGCTTGATGCTGGGGT
GCAACGGATTGATATTTACTGCCTATGCCGCACTCCCGAGCCAAAAGAGCGTCAACCTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

74.912

98.951

0.741
  comF Vibrio campbellii strain DS40M4

48.889

78.671

0.385