Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   V753_RS08085 Genome accession   NZ_CP049904
Coordinates   1606280..1607059 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain GB03     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1601280..1612059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V753_RS08065 (V753_08045) trmFO 1601967..1603274 (+) 1308 WP_007611407.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  V753_RS08070 (V753_08050) xerC 1603344..1604261 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  V753_RS08075 (V753_08055) hslV 1604277..1604822 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  V753_RS08080 (V753_08060) hslU 1604839..1606242 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  V753_RS08085 (V753_08065) codY 1606280..1607059 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  V753_RS08090 (V753_08070) flgB 1607413..1607802 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  V753_RS08095 (V753_08075) flgC 1607802..1608254 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  V753_RS08100 (V753_08080) fliE 1608265..1608585 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  V753_RS08105 (V753_08085) fliF 1608628..1610238 (+) 1611 WP_007611422.1 flagellar basal-body MS-ring/collar protein FliF -
  V753_RS08110 (V753_08090) fliG 1610251..1611267 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  V753_RS08115 (V753_08095) fliH 1611260..1612015 (+) 756 WP_007611429.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=428494 V753_RS08085 WP_003154263.1 1606280..1607059(+) (codY) [Bacillus velezensis strain GB03]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=428494 V753_RS08085 WP_003154263.1 1606280..1607059(+) (codY) [Bacillus velezensis strain GB03]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471