Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   V753_RS01785 Genome accession   NZ_CP049904
Coordinates   333471..333869 (-) Length   132 a.a.
NCBI ID   WP_007609299.1    Uniprot ID   -
Organism   Bacillus velezensis strain GB03     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 328471..338869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V753_RS01760 (V753_01765) - 328674..329879 (+) 1206 WP_007609284.1 MFS transporter -
  V753_RS01765 (V753_01770) - 330068..331270 (+) 1203 WP_029325717.1 GTP-binding protein -
  V753_RS01770 (V753_01775) - 331335..332471 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  V753_RS01775 (V753_01780) - 332486..332920 (+) 435 WP_007609296.1 RDD family protein -
  V753_RS01780 (V753_01785) - 333038..333316 (+) 279 WP_373271686.1 YckD family protein -
  V753_RS01785 (V753_01790) nin/comJ 333471..333869 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  V753_RS01790 (V753_01795) nucA/comI 333890..334327 (-) 438 WP_029325718.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  V753_RS01795 (V753_01800) hxlB 334685..335242 (-) 558 WP_007609301.1 6-phospho-3-hexuloisomerase -
  V753_RS01800 (V753_01805) hxlA 335239..335874 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  V753_RS01805 (V753_01810) - 336106..336468 (+) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14977.03 Da        Isoelectric Point: 4.9712

>NTDB_id=428468 V753_RS01785 WP_007609299.1 333471..333869(-) (nin/comJ) [Bacillus velezensis strain GB03]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=428468 V753_RS01785 WP_007609299.1 333471..333869(-) (nin/comJ) [Bacillus velezensis strain GB03]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTTCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATAGAGATTGAAAGCGTGATGTCCAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACATATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758