Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   IF704_RS02385 Genome accession   NZ_CP062380
Coordinates   426240..427514 (-) Length   424 a.a.
NCBI ID   WP_031927749.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_076     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 421240..432514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF704_RS02360 (IF704_02335) hisS 421801..423063 (+) 1263 WP_000590827.1 histidine--tRNA ligase -
  IF704_RS02365 (IF704_02340) aspS 423079..424845 (+) 1767 WP_240022169.1 aspartate--tRNA ligase -
  IF704_RS02375 (IF704_02350) - 425178..425306 (+) 129 WP_014937034.1 hypothetical protein -
  IF704_RS02380 (IF704_02355) - 425306..426079 (+) 774 WP_064138537.1 tRNA threonylcarbamoyladenosine dehydratase -
  IF704_RS02385 (IF704_02360) rarA 426240..427514 (-) 1275 WP_031927749.1 replication-associated recombination protein A Machinery gene
  IF704_RS02390 (IF704_02365) - 427599..428021 (+) 423 WP_000704122.1 Rrf2 family transcriptional regulator -
  IF704_RS02395 (IF704_02370) - 428121..428303 (+) 183 WP_000752912.1 CsbD family protein -
  IF704_RS02400 (IF704_02375) - 428343..428489 (+) 147 WP_000009236.1 SAS049 family protein -
  IF704_RS02405 (IF704_02380) - 428726..429739 (-) 1014 WP_031927748.1 LLM class flavin-dependent oxidoreductase -
  IF704_RS02410 (IF704_02385) - 430049..431191 (+) 1143 WP_000409167.1 cysteine desulfurase family protein -
  IF704_RS02415 (IF704_02390) mnmA 431192..432310 (+) 1119 WP_000066101.1 tRNA 2-thiouridine(34) synthase MnmA -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47245.84 Da        Isoelectric Point: 8.6834

>NTDB_id=428086 IF704_RS02385 WP_031927749.1 426240..427514(-) (rarA) [Staphylococcus aureus strain NAS_AN_076]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDENVRQAL
TRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGHRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKSKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=428086 IF704_RS02385 WP_031927749.1 426240..427514(-) (rarA) [Staphylococcus aureus strain NAS_AN_076]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAGCAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAAATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAGGATGAAGAGAATGGTTTAAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCATAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATCCCACTAAGTCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAGCAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

AAA C-terminal domain (AAA_assoc_2)

(175-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.048

99.057

0.684