Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   IF705_RS04925 Genome accession   NZ_CP062378
Coordinates   953358..954131 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain NAS_AN_079     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 948358..959131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF705_RS04905 (IF705_04870) trmFO 948701..950008 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  IF705_RS04910 (IF705_04875) xerC 950426..951322 (+) 897 WP_001015601.1 tyrosine recombinase XerC -
  IF705_RS04915 (IF705_04880) hslV 951319..951864 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  IF705_RS04920 (IF705_04885) hslU 951930..953333 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  IF705_RS04925 (IF705_04890) codY 953358..954131 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  IF705_RS04930 - 954266..954337 (-) 72 Protein_961 hypothetical protein -
  IF705_RS04935 (IF705_04900) - 954340..955659 (-) 1320 WP_001557163.1 ISL3-like element IS1181 family transposase -
  IF705_RS04940 (IF705_04905) rpsB 955998..956765 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  IF705_RS04945 (IF705_04910) - 956799..956912 (+) 114 WP_001789890.1 hypothetical protein -
  IF705_RS04950 (IF705_04915) tsf 956947..957828 (+) 882 WP_000201392.1 translation elongation factor Ts -
  IF705_RS04955 (IF705_04920) pyrH 957965..958687 (+) 723 WP_000057330.1 UMP kinase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=428012 IF705_RS04925 WP_000055337.1 953358..954131(+) (codY) [Staphylococcus aureus strain NAS_AN_079]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=428012 IF705_RS04925 WP_000055337.1 953358..954131(+) (codY) [Staphylococcus aureus strain NAS_AN_079]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428