Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   G8O30_RS08600 Genome accession   NZ_CP049742
Coordinates   1674656..1676980 (-) Length   774 a.a.
NCBI ID   WP_239671684.1    Uniprot ID   -
Organism   Mangrovibacillus cuniculi strain R1DC41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1669656..1681980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8O30_RS08585 (G8O30_08570) dtd 1671263..1671700 (-) 438 WP_239671681.1 D-aminoacyl-tRNA deacylase -
  G8O30_RS08590 (G8O30_08575) - 1671716..1673911 (-) 2196 WP_239671682.1 RelA/SpoT family protein -
  G8O30_RS08595 (G8O30_08580) - 1674122..1674634 (-) 513 WP_239671683.1 adenine phosphoribosyltransferase -
  G8O30_RS08600 (G8O30_08585) recJ 1674656..1676980 (-) 2325 WP_239671684.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  G8O30_RS08605 (G8O30_08590) - 1677396..1677719 (-) 324 WP_239671685.1 LapA family protein -
  G8O30_RS08610 (G8O30_08595) - 1677716..1678642 (-) 927 WP_239671686.1 cation diffusion facilitator family transporter -
  G8O30_RS08615 (G8O30_08600) secDF 1678838..1681105 (-) 2268 WP_239671687.1 protein translocase subunit SecDF -
  G8O30_RS08620 (G8O30_08605) - 1681217..1681522 (-) 306 WP_239671688.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 774 a.a.        Molecular weight: 86673.67 Da        Isoelectric Point: 4.8420

>NTDB_id=427602 G8O30_RS08600 WP_239671684.1 1674656..1676980(-) (recJ) [Mangrovibacillus cuniculi strain R1DC41]
MIRPKTRWKLDSVDESTVAHLVEELKCSPLLATLYVQRGLTTKEQVQTFLQTTGEGHDPYLLKNMDIAIERIHQAIDDGE
RILVYGDYDADGVTSTTVMVTALRDKGAIVDFYIPNRFTEGYGPNTAAFQQAKEAGVTLIITVDNGISGLEPIQYAQDQG
IDVIVTDHHEIGPELPPAYAIIHPRLVDQEYPFGELAGVGIAFKVAHALYGHFPKHLVELAAIGTIADLVPLQDENRLFA
AQGIQALKRSNRLGIKALLKKASAKQEELDEETIGFVIGPRLNAIGRLGDAKPAVDLLLAEEVEEAMELAEEIDQANKER
KDIVKSITEEAMEQVEDRLAQGYDDKVHVIGKEGWNAGVVGIVASRLVDKYYRPTIVLGFDEAENKAKGSARSIEGFDLF
ESLSECRDILPHFGGHAMAAGMTLQLSDVESLRQRLNEIASQSLTQEQFIPLTKIQVALSPSEVDINSLEEIQQLAPFGM
GNPKPKVMIKESNLSSVRKIGNDQSHLKLVLESEEVELDVVGFGFGSMADQLSPLAKISAIGELSINEWNNRKKAQLMLQ
DIQVNHLQVYDYRGVKQWKRWIDTVPNDDSMYVLFREQSKGLLPLNELPKEPISYQEVLKEKASSVVFLDLPPSLEELSN
AINCLEPERVYAVFHHQEDNFFSTFPTRDHFKWFYGFLLKRGSFDLKKHGEALANHRGWSKETVKFMSQVFFELEFVTID
DGILSPNTNVQKKDLHHSPSYAKRQAAYEVENMLLYSSLLELTKLLQPKEPSLV

Nucleotide


Download         Length: 2325 bp        

>NTDB_id=427602 G8O30_RS08600 WP_239671684.1 1674656..1676980(-) (recJ) [Mangrovibacillus cuniculi strain R1DC41]
ATGATTCGACCGAAAACGAGATGGAAATTAGATTCCGTAGATGAAAGTACAGTAGCTCATTTAGTAGAAGAACTGAAGTG
TTCCCCGCTTTTAGCTACTTTATATGTACAGCGTGGATTGACTACGAAAGAGCAAGTACAAACATTTTTACAAACAACAG
GTGAAGGACATGATCCTTACTTGTTAAAGAATATGGATATAGCAATAGAAAGAATTCATCAAGCAATTGATGACGGAGAA
CGTATATTAGTTTACGGAGATTACGATGCCGATGGAGTAACAAGTACTACTGTAATGGTAACTGCACTTAGAGACAAAGG
TGCCATCGTAGACTTCTATATTCCTAATCGGTTTACAGAAGGATATGGACCAAATACTGCTGCCTTTCAACAGGCAAAAG
AAGCTGGTGTCACGTTAATTATCACAGTGGATAACGGTATTTCAGGTCTAGAGCCAATTCAATATGCCCAAGATCAAGGA
ATAGATGTTATCGTCACTGATCACCATGAAATCGGACCAGAATTACCCCCTGCTTATGCAATCATTCATCCCAGGTTAGT
TGATCAAGAATACCCATTCGGTGAACTAGCTGGCGTAGGAATCGCATTTAAAGTAGCGCATGCACTCTATGGTCATTTCC
CAAAACATTTAGTAGAACTTGCGGCAATTGGAACGATTGCTGATTTAGTACCATTACAAGATGAAAATCGTCTGTTCGCT
GCGCAAGGGATTCAAGCGTTGAAAAGATCTAATCGCTTAGGAATCAAAGCTTTGTTGAAAAAAGCTAGTGCAAAACAAGA
AGAACTCGATGAGGAGACCATAGGCTTTGTCATTGGCCCTAGACTAAATGCCATTGGAAGACTTGGTGATGCGAAGCCTG
CTGTTGATTTACTGTTAGCAGAAGAGGTAGAAGAAGCGATGGAGCTAGCAGAAGAAATCGATCAAGCGAACAAAGAGAGA
AAAGACATTGTAAAGTCCATCACAGAAGAGGCGATGGAGCAAGTAGAGGACAGGCTTGCACAAGGGTATGACGATAAAGT
CCATGTAATTGGAAAAGAAGGATGGAATGCAGGTGTTGTTGGGATTGTTGCATCTAGACTAGTGGACAAGTATTATCGTC
CTACTATCGTGCTAGGCTTTGATGAAGCAGAAAACAAAGCAAAAGGCTCTGCTCGATCCATAGAAGGCTTTGATTTGTTT
GAATCACTATCTGAGTGTCGAGATATCCTTCCGCACTTTGGAGGGCATGCGATGGCTGCAGGAATGACACTACAGCTATC
CGATGTGGAAAGTTTACGACAGCGCCTGAATGAGATTGCATCTCAATCGTTAACACAGGAGCAATTCATCCCTCTAACGA
AAATTCAGGTTGCATTATCGCCTAGTGAAGTAGATATAAATAGTTTAGAAGAGATTCAACAATTAGCTCCTTTTGGAATG
GGGAATCCAAAGCCAAAAGTGATGATTAAAGAATCGAATCTTTCTTCGGTACGAAAAATAGGAAACGATCAAAGTCACTT
GAAATTAGTGTTAGAGAGTGAAGAAGTAGAATTAGATGTAGTGGGATTTGGTTTCGGTAGCATGGCAGACCAGCTTTCAC
CACTAGCTAAAATTTCTGCAATCGGGGAACTTTCCATCAACGAATGGAACAATCGAAAGAAAGCTCAGTTAATGCTTCAA
GATATCCAAGTGAATCATTTACAAGTATATGATTACCGCGGAGTGAAGCAGTGGAAAAGATGGATTGATACGGTTCCGAA
TGACGATAGTATGTATGTCTTATTCAGAGAACAATCAAAAGGATTGCTTCCACTAAATGAGCTTCCGAAAGAGCCAATCT
CTTATCAAGAAGTTTTAAAAGAAAAGGCATCTTCTGTTGTCTTTTTAGACTTACCACCTTCTTTAGAAGAGTTATCAAAT
GCTATTAATTGTCTAGAACCAGAAAGAGTGTACGCTGTCTTCCACCATCAAGAAGATAATTTTTTCAGCACATTTCCGAC
CCGAGATCATTTTAAATGGTTTTATGGATTCTTGCTAAAAAGAGGTAGTTTTGACCTAAAGAAACATGGTGAAGCATTAG
CTAATCACCGTGGATGGTCAAAAGAAACAGTAAAATTTATGTCACAGGTGTTTTTTGAATTAGAATTTGTTACAATAGAC
GATGGAATTCTTTCGCCAAACACGAATGTTCAAAAGAAGGACCTCCATCATTCTCCGTCTTATGCGAAAAGACAAGCAGC
ATATGAAGTGGAGAATATGTTATTATATTCGTCTTTACTCGAGCTAACAAAGTTGTTACAACCGAAAGAACCAAGCTTGG
TCTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(81-225)

DHHA1 domain (DHHA1)

(314-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-765)

RecJ OB domain (RecJ_OB)

(457-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

51.684

99.742

0.516