Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   G8O30_RS08500 Genome accession   NZ_CP049742
Coordinates   1652338..1654728 (-) Length   796 a.a.
NCBI ID   WP_239671666.1    Uniprot ID   A0A7S8CBL3
Organism   Mangrovibacillus cuniculi strain R1DC41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1647338..1659728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8O30_RS08480 (G8O30_08465) alaS 1647386..1650022 (-) 2637 WP_239671662.1 alanine--tRNA ligase -
  G8O30_RS08485 (G8O30_08470) - 1650347..1651423 (-) 1077 WP_239671663.1 AI-2E family transporter -
  G8O30_RS08490 (G8O30_08475) - 1651898..1652023 (-) 126 WP_239671664.1 DUF3918 family protein -
  G8O30_RS08495 (G8O30_08480) - 1652039..1652227 (-) 189 WP_239671665.1 hypothetical protein -
  G8O30_RS08500 (G8O30_08485) recD2 1652338..1654728 (-) 2391 WP_239671666.1 ATP-dependent RecD-like DNA helicase Machinery gene
  G8O30_RS08505 (G8O30_08490) - 1654747..1655400 (-) 654 WP_239671667.1 tetratricopeptide repeat protein -
  G8O30_RS08510 (G8O30_08495) mnmA 1655900..1657012 (-) 1113 WP_239671668.1 tRNA 2-thiouridine(34) synthase MnmA -
  G8O30_RS08515 (G8O30_08500) - 1657025..1658167 (-) 1143 WP_239671669.1 cysteine desulfurase family protein -
  G8O30_RS08520 (G8O30_08505) cymR 1658201..1658620 (-) 420 WP_239671670.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 89671.54 Da        Isoelectric Point: 4.7096

>NTDB_id=427601 G8O30_RS08500 WP_239671666.1 1652338..1654728(-) (recD2) [Mangrovibacillus cuniculi strain R1DC41]
MGQDSMQQKEPYVKGRLLVTIFYNESNLYSVVRIRVEETNTSWAERELMVTGYFPSLEEETTYTFYGQLKEHPKFGPQFH
VSRFQKEMPQSKQGTIQYLSSDLFEGIGKKTAERIVDHIGEGALRKILADPSILDDVPQLAKTKAESLINSLKEHQGLEH
VMVGLTDLGFGPQLSMKIFSLYKEDSLSVIEKNPYILVEDIEGIGFKRADQIGIQLGFTGGHPDRMKAAILHLLDDLTYK
EGHTYVEAEELLPAVVELLAHHQEEIPFEDISKQVLALGEEGKIIIEERKIFMPSLYFSEKGLVTSIERILADDSFLDEF
PESEFLLALGELEEALGVEYAPSQKEAIEKALKSGMMILTGGPGTGKTTVIKGIVEIYSKLHGKPLDKKEYKEEEVYPYV
LVAPTGRAAKRMQESTGLNAMTIHRLLGWKGQEEEQEEEDDEPVPFIKGSLLIIDESSMVDSWLAHQLFKRIPKGMQVIM
VGDDDQLPSVGPGQVLKDLIESNVIPTVQLTDIYRQAEGSSIIELAHSMKEGTVPANLTEPQKDRSFIQCTTAQLPDVVE
KVVANATKKGYALRDIQVLAPMYRGAAGIDELNKRLQEIVNPNLDGKRKELKFGEVVFRIGDKVLQLVNQPEQNVFNGDM
GEVISIFYAKENTEKEDMVIVSYDGNEVTYTRQDLNQITHAFCCSIHKSQGSEFPIVIIPVVRGYYRMLRRNLLYTAITR
SKRFLILCGETSAFRLGVERTDDLQRRTMLKSMLQLLGTGGDEEMEHVALTEDTWEKVNPMIGMENVTPNDFELNS

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=427601 G8O30_RS08500 WP_239671666.1 1652338..1654728(-) (recD2) [Mangrovibacillus cuniculi strain R1DC41]
ATGGGGCAAGATTCCATGCAACAAAAAGAGCCATATGTGAAAGGGAGACTTCTTGTTACCATCTTTTACAACGAGTCTAA
TTTATATTCCGTCGTCCGCATCCGTGTAGAAGAAACAAATACCTCTTGGGCGGAACGTGAACTTATGGTGACGGGATACT
TTCCCTCTCTAGAAGAGGAAACAACCTATACCTTTTATGGTCAGTTAAAAGAGCATCCAAAATTTGGGCCTCAATTCCAT
GTTTCTAGATTTCAAAAGGAAATGCCACAGTCCAAGCAAGGTACGATTCAATATCTTTCGAGTGATTTGTTTGAAGGAAT
CGGTAAAAAGACCGCTGAACGCATAGTTGACCACATCGGTGAAGGAGCATTACGAAAGATTCTAGCGGATCCAAGTATCT
TAGATGATGTGCCACAGTTAGCGAAAACCAAAGCGGAAAGTTTGATTAATTCCTTAAAAGAGCATCAAGGTTTGGAACAC
GTCATGGTCGGATTGACTGACTTAGGCTTTGGTCCGCAGCTTTCCATGAAAATATTCTCATTATATAAAGAAGATTCTTT
AAGTGTTATTGAGAAAAACCCATACATATTAGTGGAGGACATCGAAGGAATTGGTTTTAAAAGAGCTGACCAAATTGGTA
TTCAGCTAGGTTTTACAGGTGGTCATCCTGATCGAATGAAAGCGGCCATTCTTCATTTACTCGATGATCTCACATATAAA
GAAGGCCATACATATGTCGAAGCAGAGGAATTACTTCCTGCTGTAGTAGAGTTACTTGCTCATCACCAAGAAGAAATCCC
TTTTGAAGATATCTCTAAGCAAGTTTTAGCACTAGGAGAAGAAGGGAAAATTATTATAGAGGAACGTAAAATATTTATGC
CCTCTTTGTATTTTTCTGAAAAAGGACTAGTGACGAGCATAGAGCGTATCTTAGCAGATGATTCTTTCTTAGATGAGTTC
CCTGAATCTGAATTCTTGTTAGCGTTAGGTGAATTGGAAGAAGCGCTTGGAGTAGAATACGCACCTTCTCAAAAAGAAGC
AATTGAAAAGGCGTTAAAGTCAGGGATGATGATTTTAACTGGCGGTCCAGGTACAGGGAAAACAACTGTTATTAAGGGAA
TTGTTGAAATCTATAGTAAGCTACATGGAAAGCCACTTGATAAAAAGGAATATAAAGAAGAGGAAGTATACCCTTATGTC
CTAGTCGCTCCAACAGGTCGTGCAGCAAAACGTATGCAAGAATCAACTGGCTTAAACGCTATGACTATTCATCGTTTGTT
AGGTTGGAAAGGGCAAGAGGAAGAACAAGAAGAAGAGGATGATGAGCCAGTTCCGTTTATCAAAGGATCACTACTAATAA
TCGACGAATCCTCGATGGTAGATAGTTGGTTAGCTCATCAACTTTTCAAACGAATCCCTAAAGGCATGCAGGTAATTATG
GTGGGGGATGATGACCAATTGCCATCTGTTGGACCTGGTCAAGTGCTAAAAGATTTAATTGAAAGTAACGTGATTCCAAC
GGTCCAGCTAACGGATATTTACCGTCAGGCGGAGGGTTCTTCGATCATCGAGTTAGCGCATTCTATGAAAGAAGGGACAG
TCCCTGCTAACTTAACTGAACCGCAAAAAGATCGTAGTTTTATTCAATGTACGACAGCTCAATTACCAGATGTTGTGGAA
AAAGTTGTGGCGAATGCTACGAAAAAAGGGTACGCACTAAGAGATATCCAAGTGTTAGCTCCGATGTACCGTGGGGCTGC
AGGTATAGATGAGCTAAATAAAAGGCTGCAAGAAATTGTTAATCCTAATCTAGATGGCAAGCGGAAAGAACTGAAATTTG
GAGAAGTGGTTTTCCGAATTGGTGATAAAGTTCTCCAACTTGTCAATCAACCAGAGCAAAATGTATTCAATGGAGATATG
GGAGAAGTCATTTCTATCTTTTATGCAAAAGAAAACACAGAAAAAGAAGACATGGTGATTGTAAGTTATGACGGAAATGA
AGTGACATACACACGGCAAGATCTCAATCAAATTACGCATGCATTCTGTTGCTCCATTCATAAATCTCAAGGAAGTGAAT
TCCCTATTGTAATTATTCCGGTGGTTCGCGGTTATTACCGAATGTTGCGTAGAAATTTACTATACACAGCTATCACTAGA
AGTAAACGCTTCTTAATTCTTTGTGGAGAAACTTCAGCATTTCGACTTGGTGTGGAAAGAACGGATGATTTACAACGACG
AACGATGTTAAAATCCATGCTTCAATTACTTGGCACCGGGGGCGACGAAGAAATGGAACATGTAGCTTTAACAGAAGATA
CATGGGAAAAGGTAAATCCAATGATTGGTATGGAAAACGTTACGCCGAATGATTTCGAGTTAAACTCATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(340-552)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-661)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-728)

Helix-hairpin-helix containing domain (HHH_RecD2)

(154-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S8CBL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

59.772

98.995

0.592