Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   G7X27_RS08120 Genome accession   NZ_CP049741
Coordinates   1614733..1615512 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain UB2017     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1609733..1620512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7X27_RS08100 trmFO 1610420..1611727 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  G7X27_RS08105 xerC 1611797..1612714 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  G7X27_RS08110 hslV 1612730..1613275 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  G7X27_RS08115 hslU 1613292..1614695 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  G7X27_RS08120 codY 1614733..1615512 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  G7X27_RS08125 flgB 1615866..1616255 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  G7X27_RS08130 flgC 1616255..1616707 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  G7X27_RS08135 fliE 1616718..1617038 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  G7X27_RS08140 fliF 1617081..1618691 (+) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  G7X27_RS08145 fliG 1618704..1619720 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  G7X27_RS08150 fliH 1619713..1620468 (+) 756 WP_032874891.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=427540 G7X27_RS08120 WP_003154263.1 1614733..1615512(+) (codY) [Bacillus velezensis strain UB2017]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=427540 G7X27_RS08120 WP_003154263.1 1614733..1615512(+) (codY) [Bacillus velezensis strain UB2017]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471