Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SMULJ23_RS09215 Genome accession   NC_017768
Coordinates   1890044..1891312 (+) Length   422 a.a.
NCBI ID   WP_014678268.1    Uniprot ID   -
Organism   Streptococcus mutans LJ23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1885044..1896312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMULJ23_RS09185 (SMULJ23_1794) - 1886114..1886308 (+) 195 WP_002269406.1 hypothetical protein -
  SMULJ23_RS10485 - 1886336..1886632 (-) 297 Protein_1786 LacI family DNA-binding transcriptional regulator -
  SMULJ23_RS09190 (SMULJ23_1795) - 1886694..1887437 (-) 744 WP_014678267.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  SMULJ23_RS09195 (SMULJ23_1796) prmA 1887438..1888391 (-) 954 WP_002284623.1 50S ribosomal protein L11 methyltransferase -
  SMULJ23_RS09200 (SMULJ23_1797) - 1888619..1888915 (-) 297 WP_002268478.1 LlsX family protein -
  SMULJ23_RS09205 (SMULJ23_1798) - 1888928..1889398 (-) 471 WP_002283514.1 DUF3013 family protein -
  SMULJ23_RS09210 (SMULJ23_1799) - 1889563..1890054 (+) 492 WP_002285953.1 GNAT family N-acetyltransferase -
  SMULJ23_RS09215 (SMULJ23_1800) rarA 1890044..1891312 (+) 1269 WP_014678268.1 replication-associated recombination protein A Machinery gene
  SMULJ23_RS09225 (SMULJ23_1801) - 1891715..1893631 (-) 1917 WP_014678269.1 heavy metal translocating P-type ATPase -
  SMULJ23_RS09230 (SMULJ23_1802) - 1893730..1894524 (+) 795 WP_002282638.1 helix-turn-helix domain-containing protein -
  SMULJ23_RS09235 (SMULJ23_1803) - 1894693..1895718 (-) 1026 WP_002270089.1 YeiH family protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46484.84 Da        Isoelectric Point: 6.5109

>NTDB_id=42737 SMULJ23_RS09215 WP_014678268.1 1890044..1891312(+) (rarA) [Streptococcus mutans LJ23]
MPNNLALRMRPRDISEVIGQKHLVGQGKIISRMVTANRLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATTDTKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGQIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAMQ
VALTDTERGFDFEVKLDDDALDFIAQATNGDLRSAYNSLDLAIMSTQPDDNGSRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPDAQIHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKAIADLHKSGTIPIPRHLRDGHYAGSKELGNAQDYLYPHAYPEKWVKQQYLPDKLKGANYFTA
NETGKYERALGANKSKIDQLSQ

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=42737 SMULJ23_RS09215 WP_014678268.1 1890044..1891312(+) (rarA) [Streptococcus mutans LJ23]
ATGCCAAATAACCTCGCACTTCGTATGCGCCCTCGAGATATCTCTGAAGTTATCGGACAAAAGCATCTAGTCGGTCAAGG
CAAGATTATTTCGCGAATGGTCACTGCTAACCGTCTGTCTTCCATGATTCTTTATGGTCCTCCCGGAATTGGAAAAACCT
CAATCGCTTCTGCCATCGCTGGTACAACCAAATTTGCCTTTCGTACCTTCAATGCAACAACCGACACTAAAAAACGCCTA
CAGGAAATTGCTGAAGAAGCTAAATTTTCAGGTGGTTTGGTTTTACTCCTAGATGAAATTCATCGTCTAGATAAAACTAA
GCAAGATTTTCTTCTCCCCTTGTTGGAAAACGGACAAATTATCATGATTGGCGCAACCACTGAAAATCCCTTTTTCTCTG
TCACCCCTGCCATTCGCTCGCGTGTTCAGATTTTTGAATTAGAGCCATTATCAAATGAGGATATCAAAAAAGCTATGCAA
GTAGCTCTGACAGATACAGAGCGCGGCTTTGATTTTGAAGTCAAACTAGATGATGATGCTCTTGACTTCATTGCGCAAGC
CACCAATGGCGACTTGCGCTCTGCCTATAATTCTCTTGATTTAGCCATCATGTCCACCCAGCCAGATGACAATGGTAGTC
GCCACATCACCTTAGACACTGTTGAAAACAGCCTACAGCGCAGCTACATTACCATGGACAAGGATGGTGATGGCCACTAT
GATGTCTTATCCGCCTTACAAAAGTCCATCCGTGGTTCAGATGTCAATGCCAGTCTGCACTATGCTGCTAGATTAATTGA
AGCTGGTGATCTGCCAAGTCTGGCCAGACGTTTAACTGTTATTGCCTACGAAGACATCGGTTTGGCCAATCCTGATGCAC
AGATTCATACAGTGACAGCGCTGGAAGCAGCCCAAAAAATTGGTTTTCCTGAAGCCCGCATTTTAATTGCCAATGTTGTT
ATTGATTTAGCACTCTCACCTAAGTCTAATTCCGCTTATGTTGCTATGGACAAGGCCATTGCAGATCTTCATAAGAGTGG
CACGATCCCTATTCCTCGCCACTTACGTGATGGTCATTACGCTGGCAGTAAAGAATTGGGCAATGCCCAAGATTATCTCT
ACCCGCATGCCTATCCGGAAAAATGGGTTAAGCAGCAATATTTACCAGACAAACTCAAAGGAGCTAACTATTTTACTGCC
AATGAAACAGGTAAATACGAACGGGCATTAGGAGCTAATAAGAGTAAGATTGACCAGCTCTCCCAATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.951

96.445

0.578

Multiple sequence alignment