Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   IF722_RS05965 Genome accession   NZ_CP062360
Coordinates   1226864..1227637 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain NAS_AN_157     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1221864..1232637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF722_RS05945 (IF722_05920) trmFO 1222208..1223515 (+) 1308 WP_072491544.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  IF722_RS05950 (IF722_05925) xerC 1223932..1224828 (+) 897 WP_001015609.1 tyrosine recombinase XerC -
  IF722_RS05955 (IF722_05930) hslV 1224825..1225370 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  IF722_RS05960 (IF722_05935) hslU 1225436..1226839 (+) 1404 WP_098817802.1 ATP-dependent protease ATPase subunit HslU -
  IF722_RS05965 (IF722_05940) codY 1226864..1227637 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  IF722_RS05970 (IF722_05945) - 1227688..1227780 (+) 93 WP_031788481.1 hypothetical protein -
  IF722_RS05975 (IF722_05950) rpsB 1227979..1228746 (+) 768 WP_031786209.1 30S ribosomal protein S2 -
  IF722_RS05980 (IF722_05955) - 1228780..1228893 (+) 114 WP_001789890.1 hypothetical protein -
  IF722_RS05985 (IF722_05960) tsf 1228928..1229809 (+) 882 WP_000201387.1 translation elongation factor Ts -
  IF722_RS05990 (IF722_05965) pyrH 1229946..1230668 (+) 723 WP_000057330.1 UMP kinase -
  IF722_RS05995 (IF722_05970) frr 1230687..1231241 (+) 555 WP_001280006.1 ribosome recycling factor -
  IF722_RS06000 (IF722_05975) - 1231614..1232384 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=427303 IF722_RS05965 WP_000055337.1 1226864..1227637(+) (codY) [Staphylococcus aureus strain NAS_AN_157]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=427303 IF722_RS05965 WP_000055337.1 1226864..1227637(+) (codY) [Staphylococcus aureus strain NAS_AN_157]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCGCCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGTGGTACGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAGTCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428