Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   DER53_RS00460 Genome accession   NZ_CP049703
Coordinates   85039..87396 (-) Length   785 a.a.
NCBI ID   WP_121910011.1    Uniprot ID   A0A6G9IYL9
Organism   Parageobacillus toebii NBRC 107807 strain DSM 14590     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 80039..92396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DER53_RS00440 (DER53_00440) - 81372..81548 (-) 177 WP_015864616.1 hypothetical protein -
  DER53_RS00445 (DER53_00445) dtd 81658..82116 (-) 459 WP_015864617.1 D-aminoacyl-tRNA deacylase -
  DER53_RS00450 (DER53_00450) - 82131..84329 (-) 2199 WP_015864618.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  DER53_RS00455 (DER53_00455) - 84527..85039 (-) 513 WP_062753014.1 adenine phosphoribosyltransferase -
  DER53_RS00460 (DER53_00460) recJ 85039..87396 (-) 2358 WP_121910011.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  DER53_RS00465 (DER53_00465) secDF 87572..89824 (-) 2253 WP_062753018.1 protein translocase subunit SecDF -
  DER53_RS00470 (DER53_00470) - 90021..90317 (-) 297 WP_062753020.1 post-transcriptional regulator -
  DER53_RS00475 (DER53_00475) spoVB 90421..91983 (+) 1563 WP_062753022.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88084.30 Da        Isoelectric Point: 5.4017

>NTDB_id=427288 DER53_RS00460 WP_121910011.1 85039..87396(-) (recJ) [Parageobacillus toebii NBRC 107807 strain DSM 14590]
MLIAKTRWDVKRPDENIVTHLVEQSHMDPLIAKLLVHRGVRTVEEANAFLYPLKQPFHDPFLLDGMERAIERIQRAIQHG
EHILVYGDYDADGVSSTTVMVSALKEAGAIVDFYIPNRFTEGYGPNENAFRWAKEQGFSLIITVDNGIAAVKEVALANEL
GMDVIITDHHEVGPALPEAYEIIHPKKPGSTYPFRELAGVGVAFKVAHALLGDVPRHFLDVVAIGTIADLVSLTGENRLL
VAQGLEQLRNTKRIGLRALCKQCGIEAQEINEQTVGFVIAPRMNAVGRLGEATPAVRLLMTEKEEEAQRLAKEMDDLNRE
RQQLVAKIAEEAAQIVNEQFPPSENKVLVIAKEGWNPGVIGIVASRLVEQFYRPTIVLSIDSEKGIAKGSARSIHGFDMF
SSLSTCRDILPHFGGHPMAAGMTLSVDHIDELRQRLNALADDMLTADDFTPITPIDAVCSVSDLTLSVAEQLEKFAPFGV
DNAKPLFLMENVSVETIRRIGADQSHLKAVFAQNGAAIDSVGFGFGYLCDEIAPDAKVSVVGELMVNEWNNLRKPQLMIC
DVAVHECQLFDIRGMRDVRPLIASLPKDKRMLIMFREGTADALGLEAYKEEIYYTASVEEASRLCLDNRYVVLLDMPTSL
EIIKMLLRSSLPARIYALFYQRETHFFRTLPTRDHFKWFYAFLRKKGVFNLAKYGGELARARGWTEETVRFMAKVFLELE
FITQQDGVVSLVPQPAKRDLSESPTYRFKQAQFELENLFLYSTYEQLKRCLFEMKGSQTYEETNV

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=427288 DER53_RS00460 WP_121910011.1 85039..87396(-) (recJ) [Parageobacillus toebii NBRC 107807 strain DSM 14590]
ATGTTAATAGCAAAAACACGTTGGGATGTGAAACGTCCTGACGAAAATATCGTAACGCATTTAGTAGAACAGTCGCATAT
GGATCCGTTGATTGCGAAGCTTCTTGTTCATCGTGGAGTTCGTACGGTAGAAGAGGCGAACGCGTTTTTATATCCGCTGA
AACAACCGTTTCATGATCCGTTTTTGCTAGATGGGATGGAACGGGCAATTGAGCGGATTCAACGGGCGATACAACATGGA
GAGCATATTTTGGTATATGGTGATTATGATGCTGACGGCGTAAGCAGCACGACGGTAATGGTTAGTGCTCTGAAGGAAGC
TGGCGCCATTGTGGATTTTTACATTCCCAATCGATTTACCGAAGGATACGGTCCGAATGAGAATGCATTTCGTTGGGCAA
AGGAGCAAGGATTTTCTCTGATTATCACGGTCGATAACGGCATTGCTGCAGTGAAGGAAGTGGCGCTTGCCAATGAGCTT
GGTATGGATGTCATTATTACAGATCATCATGAAGTGGGACCGGCGTTGCCGGAAGCATATGAAATTATTCATCCGAAAAA
GCCCGGCAGTACATACCCGTTTCGTGAATTAGCAGGCGTCGGAGTAGCATTTAAAGTTGCCCACGCATTGCTTGGGGATG
TGCCGCGTCATTTTTTAGATGTCGTAGCAATTGGAACGATCGCTGATCTCGTTTCCCTTACCGGAGAAAATCGGCTGTTG
GTTGCACAAGGGCTTGAACAGTTGCGAAATACGAAACGTATTGGATTGCGTGCATTGTGTAAACAATGTGGAATAGAAGC
ACAAGAAATTAACGAACAGACGGTTGGGTTCGTTATTGCGCCGCGGATGAATGCAGTTGGCCGGTTGGGAGAAGCAACCC
CTGCTGTCAGATTGTTAATGACGGAGAAAGAAGAGGAAGCACAAAGACTTGCGAAAGAAATGGATGATTTAAATCGGGAG
CGGCAGCAGCTTGTCGCGAAAATAGCGGAGGAAGCGGCACAAATAGTAAATGAACAATTTCCGCCATCCGAAAATAAAGT
GCTTGTGATCGCAAAAGAAGGATGGAATCCAGGGGTCATTGGCATTGTTGCTTCCCGATTGGTTGAACAATTTTACCGTC
CGACGATTGTTTTGAGCATTGATTCCGAGAAAGGAATTGCAAAAGGTTCGGCGCGAAGCATTCATGGGTTTGATATGTTT
TCAAGCTTATCGACATGTCGCGATATTTTGCCACATTTTGGCGGGCATCCAATGGCGGCGGGAATGACATTATCGGTTGA
TCATATTGATGAATTGCGTCAGCGTCTCAACGCACTTGCCGATGATATGTTGACAGCCGATGATTTTACCCCAATTACAC
CGATTGATGCAGTTTGTTCCGTATCTGATTTAACGCTTTCGGTAGCCGAACAGCTTGAAAAGTTTGCTCCGTTTGGTGTA
GATAACGCAAAGCCTCTTTTTTTAATGGAAAATGTATCAGTGGAAACGATCCGACGCATCGGGGCTGACCAGTCGCATTT
AAAGGCTGTTTTCGCCCAAAATGGCGCTGCGATTGATAGCGTCGGGTTCGGCTTTGGTTATTTGTGCGATGAAATCGCTC
CAGATGCGAAAGTGTCCGTGGTTGGCGAGTTAATGGTGAATGAGTGGAACAATCTTCGCAAACCGCAGCTAATGATTTGC
GATGTTGCGGTGCATGAATGTCAATTGTTTGATATTCGCGGTATGCGCGATGTACGGCCACTGATTGCGTCTCTTCCGAA
AGATAAGCGGATGTTGATTATGTTTCGGGAAGGTACGGCAGATGCATTAGGACTTGAAGCATATAAAGAAGAGATTTACT
ACACGGCCTCAGTGGAAGAAGCGTCGCGGCTTTGTTTAGATAACCGGTACGTTGTGCTGTTAGATATGCCAACGTCTTTG
GAAATCATAAAAATGTTGTTACGTTCTAGTTTACCTGCGCGCATTTATGCGTTATTCTATCAAAGGGAGACTCATTTTTT
TCGCACGTTGCCAACGCGTGATCATTTTAAATGGTTTTATGCGTTTTTGAGAAAAAAAGGTGTGTTTAACTTGGCTAAGT
ATGGTGGCGAGTTAGCACGTGCGCGTGGATGGACAGAAGAAACTGTCCGGTTTATGGCAAAAGTATTTCTCGAGCTGGAA
TTTATTACGCAACAGGATGGAGTTGTATCGCTTGTTCCTCAACCGGCTAAACGCGATTTAAGCGAATCGCCGACTTATCG
CTTTAAACAAGCTCAGTTTGAGCTTGAAAATCTATTTTTGTATTCAACATATGAACAATTAAAGCGTTGTCTTTTCGAAA
TGAAAGGTTCGCAAACATACGAGGAGACAAATGTGTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)

DHHA1 domain (DHHA1)

(302-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G9IYL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.248

100

0.532