Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SMULJ23_RS01735 Genome accession   NC_017768
Coordinates   377698..378483 (+) Length   261 a.a.
NCBI ID   WP_002276477.1    Uniprot ID   -
Organism   Streptococcus mutans LJ23     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 372698..383483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMULJ23_RS01715 (SMULJ23_0328) - 373453..374838 (+) 1386 WP_044560778.1 Cof-type HAD-IIB family hydrolase -
  SMULJ23_RS01720 (SMULJ23_0329) - 375115..375564 (-) 450 WP_002263469.1 universal stress protein -
  SMULJ23_RS01725 (SMULJ23_0330) - 375662..376198 (-) 537 WP_002263470.1 biotin transporter BioY -
  SMULJ23_RS01730 (SMULJ23_0331) - 376375..377589 (+) 1215 WP_002263471.1 pyridoxal phosphate-dependent aminotransferase -
  SMULJ23_RS01735 (SMULJ23_0332) codY 377698..378483 (+) 786 WP_002276477.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SMULJ23_RS01740 (SMULJ23_0333) - 378485..379036 (+) 552 WP_002268947.1 isochorismatase family cysteine hydrolase -
  SMULJ23_RS01745 (SMULJ23_0334) aspS 379294..381045 (+) 1752 WP_014677781.1 aspartate--tRNA ligase -
  SMULJ23_RS01750 (SMULJ23_0335) gatC 381172..381474 (+) 303 WP_014677782.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  SMULJ23_RS01755 (SMULJ23_0336) gatA 381474..382940 (+) 1467 WP_014677783.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28940.11 Da        Isoelectric Point: 4.5032

>NTDB_id=42667 SMULJ23_RS01735 WP_002276477.1 377698..378483(+) (codY) [Streptococcus mutans LJ23]
MANLLSKTRRITSILQRSVESLQSDLPYNTIADQLAEIIDCNACIIDGSGIILGYAMKYKTNTDRVEEFFQAKKLPDDYV
KSASRIYDTEANLSVENDLTIFPIESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDKEFNDDDLILIEISSTVVGIQLLN
LQTENLEETIRKQTAINMAINTLSYSEMKAVAAILNELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKDYG

Nucleotide


Download         Length: 786 bp        

>NTDB_id=42667 SMULJ23_RS01735 WP_002276477.1 377698..378483(+) (codY) [Streptococcus mutans LJ23]
ATGGCTAATTTATTATCGAAAACGCGACGTATTACATCCATTTTACAACGATCGGTTGAGAGCCTTCAAAGTGATTTGCC
TTATAATACGATTGCAGATCAATTGGCTGAAATTATTGATTGTAATGCTTGTATTATTGATGGTAGTGGTATTATTCTCG
GCTATGCTATGAAGTATAAAACCAATACAGATCGTGTTGAAGAATTTTTCCAAGCTAAAAAATTACCTGATGATTATGTA
AAATCAGCCAGTCGTATTTATGATACAGAAGCCAATCTGTCGGTTGAAAATGATTTGACCATTTTTCCAATTGAATCAAA
AGATATCTATCCTGATGGCTTGACGACTATTGCTCCCATCTATGGCGGTGGTATGCGTCTTGGTTCTCTTATTATCTGGC
GTAATGATAAAGAATTCAATGATGACGATTTGATTCTAATTGAGATTTCTTCTACTGTTGTTGGAATTCAATTATTGAAC
TTGCAGACAGAAAATCTTGAAGAAACAATTCGTAAGCAGACTGCTATTAATATGGCGATTAATACCTTGTCTTATTCAGA
AATGAAAGCTGTCGCAGCTATTCTCAATGAATTAGATGGCAATGAAGGTCGCTTGACCGCATCGGTTATTGCTGATCGTA
TCGGTATTACACGTAGCGTGATTGTTAATGCTCTTAGAAAGTTAGAAAGTGCCGGTATTATTGAAAGTCGTTCCTTAGGT
ATGAAAGGTACTTATCTCAAAGTTATTAATGAAGGTATTTTTGATAAATTAAAGGACTATGGTTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-260)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

65.37

98.467

0.644
  codY Bacillus subtilis subsp. subtilis str. 168

48.047

98.084

0.471

Multiple sequence alignment