Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   G7L40_RS22730 Genome accession   NZ_CP049598
Coordinates   4977539..4979308 (-) Length   589 a.a.
NCBI ID   WP_019687273.1    Uniprot ID   A0A378XY21
Organism   Paenibacillus polymyxa strain 2020     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4972539..4984308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7L40_RS22715 (G7L40_22770) - 4973852..4974541 (-) 690 WP_019687275.1 type 1 glutamine amidotransferase -
  G7L40_RS22720 (G7L40_22775) - 4974728..4975462 (-) 735 WP_230877340.1 IclR family transcriptional regulator -
  G7L40_RS22725 (G7L40_22780) rcrQ 4975702..4977552 (-) 1851 WP_019687274.1 ABC transporter ATP-binding protein Regulator
  G7L40_RS22730 (G7L40_22785) rcrP 4977539..4979308 (-) 1770 WP_019687273.1 ABC transporter ATP-binding protein Regulator
  G7L40_RS22735 (G7L40_22790) - 4979388..4979795 (-) 408 WP_019687272.1 MarR family winged helix-turn-helix transcriptional regulator -
  G7L40_RS22740 (G7L40_22795) - 4980351..4982024 (-) 1674 WP_019687270.1 RICIN domain-containing protein -
  G7L40_RS28060 (G7L40_22800) - 4982411..4982632 (-) 222 WP_080561164.1 epoxide hydrolase N-terminal domain-containing protein -
  G7L40_RS22750 (G7L40_22805) - 4982617..4983315 (+) 699 WP_019687269.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65162.59 Da        Isoelectric Point: 7.8033

>NTDB_id=426390 G7L40_RS22730 WP_019687273.1 4977539..4979308(-) (rcrP) [Paenibacillus polymyxa strain 2020]
MLKIFKYLKKNEWMFVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTAGTPMSDLLIPGIYMLLCAVGSMIASIIVGFFAA
KVAAGLAMRLRAMVFDKALSFSMEEMNSFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIAKIADKNWQWTAS
TGVAVAVLILMLSVIVIFALPSFQKIQRLTDNLNRVTREHLTGLRVVRAYNADQYQEEKFGQANTELMNTNLFANRLMTM
VGPGMTFIMSGLSVSIYWIGAYLINGTAVPDRISLFSNMVVFSSYAVQVVMAFMMVSMIFFLMPRASISAKRIMEVLNTE
SRIIDGHETAGEEGVMGQVEFRNVSFKYPDAEEPVLRNISFTAKQGETVAFIGATGSGKTSVINMISRFYDVTEGEVLVD
GVNVRNYKQQTLHNKIGYLPQRAVLFSGTVASNVSYGDNGRAEASEKLVKTAVEIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRILRSALKQETGHATTLIVAQRIGTIKDADRIIVLDQGEIVGNGT
HKELMANCSTYQEIAYSQLSKEELVHGQE

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=426390 G7L40_RS22730 WP_019687273.1 4977539..4979308(-) (rcrP) [Paenibacillus polymyxa strain 2020]
ATGCTGAAGATATTCAAATATCTCAAGAAAAATGAATGGATGTTCGTGCTTTGCAGCTTGGCCTTCATCGTTGTGCAGGT
GTGGCTGGATTTGAAGCTGCCTGATTATATGGCCGAAATTACAACCAAGCTGCAAACTGCAGGAACGCCGATGTCGGACC
TGCTGATTCCCGGTATTTATATGCTGTTATGTGCTGTCGGCAGTATGATTGCATCTATTATTGTCGGCTTTTTTGCGGCA
AAGGTCGCGGCAGGACTGGCCATGCGCCTGCGTGCGATGGTCTTTGACAAGGCCTTATCTTTTTCGATGGAAGAGATGAA
CAGCTTTTCAACAGCCAGCCTTATTACCCGCTCCACGAACGATGTTACCCAAATTCAAACGGTGGTTGCGCTGGGGTTGC
AGGTGATCATCAAGGCGCCGATTCTGGCCGTGTGGGCCATTGCAAAGATCGCAGATAAAAACTGGCAGTGGACTGCCTCT
ACAGGAGTGGCTGTGGCTGTCCTGATCCTGATGCTGAGTGTCATTGTTATTTTTGCTCTCCCCAGTTTCCAAAAAATCCA
ACGTCTCACTGATAATCTGAACAGGGTAACACGTGAGCATCTGACGGGGCTTCGCGTAGTGCGCGCTTATAATGCAGATC
AGTATCAGGAGGAGAAGTTTGGGCAGGCCAATACCGAATTGATGAATACAAACCTGTTTGCGAACCGGTTAATGACAATG
GTTGGTCCGGGCATGACCTTTATTATGTCGGGTCTGAGTGTCTCGATTTATTGGATTGGCGCTTACCTGATTAACGGAAC
GGCCGTGCCGGACCGCATTTCGCTATTCTCTAATATGGTCGTATTCTCATCTTATGCGGTGCAGGTGGTCATGGCCTTTA
TGATGGTAAGTATGATATTCTTCCTGATGCCTCGAGCTTCGATTTCTGCCAAACGGATTATGGAGGTATTGAATACCGAA
TCCCGCATCATTGACGGGCATGAGACAGCTGGAGAAGAGGGCGTTATGGGTCAGGTGGAATTCCGTAATGTCAGCTTTAA
ATATCCGGATGCGGAGGAGCCTGTGCTTCGCAACATTAGCTTTACGGCAAAACAAGGCGAGACGGTTGCCTTTATTGGCG
CAACAGGCAGCGGTAAAACCAGCGTAATCAATATGATTTCTCGTTTCTACGATGTGACTGAGGGAGAGGTGCTCGTGGAT
GGCGTGAATGTCAGAAACTATAAGCAGCAGACACTCCATAACAAAATCGGGTATCTCCCACAGAGAGCCGTACTTTTCAG
CGGTACAGTGGCATCCAATGTTTCGTATGGCGATAACGGAAGAGCAGAAGCTTCGGAGAAACTCGTCAAAACAGCCGTGG
AGATTGCCCAAGGCACGGAGTTTGTCGAAAAAATGGACGGTCAGTATCAAGGACGGATTTCACAAGGTGGAGCGAACGTG
TCCGGTGGTCAAAAGCAGCGTCTGTCCATTGCGCGTGCCATCTACCGTCAGCCGGAGATTTATATCTTCGATGATTCCTT
CTCGGCATTGGACTACAGAACAGACCGGATTCTGCGCTCGGCGCTTAAACAAGAAACCGGCCATGCTACGACACTCATTG
TTGCTCAGCGCATAGGCACCATTAAGGACGCTGACCGGATTATCGTTCTGGACCAGGGCGAGATTGTAGGGAACGGCACA
CACAAAGAGCTGATGGCGAATTGCAGCACCTATCAGGAGATCGCTTATTCGCAGCTTTCGAAGGAGGAACTCGTACATGG
ACAAGAATGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378XY21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.5

100

0.535