Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   G6R31_RS10840 Genome accession   NZ_CP049357
Coordinates   2239252..2239851 (-) Length   199 a.a.
NCBI ID   WP_017869695.1    Uniprot ID   A0AAV4K432
Organism   Deinococcus wulumuqiensis R12     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2234252..2244851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6R31_RS10815 (G6R31_10815) - 2234725..2235072 (+) 348 WP_017869700.1 FUN14 domain-containing protein -
  G6R31_RS10820 (G6R31_10820) - 2235131..2235826 (-) 696 WP_017869699.1 zinc metallopeptidase -
  G6R31_RS10825 (G6R31_10825) - 2235985..2236689 (-) 705 WP_017869698.1 aminotransferase class IV -
  G6R31_RS10830 (G6R31_10830) - 2236690..2238588 (-) 1899 WP_017869697.1 aminodeoxychorismate components I/II -
  G6R31_RS10835 (G6R31_10835) - 2238618..2239232 (-) 615 WP_025567583.1 GNAT family protein -
  G6R31_RS10840 (G6R31_10840) recR 2239252..2239851 (-) 600 WP_017869695.1 recombination mediator RecR Machinery gene
  G6R31_RS10845 (G6R31_10845) - 2240242..2240532 (-) 291 WP_017869694.1 YbaB/EbfC family nucleoid-associated protein -
  G6R31_RS10850 (G6R31_10850) - 2240652..2241113 (+) 462 WP_017869693.1 Lrp/AsnC family transcriptional regulator -
  G6R31_RS10855 (G6R31_10855) - 2241262..2242011 (-) 750 WP_017869692.1 DUF937 domain-containing protein -
  G6R31_RS10860 (G6R31_10860) - 2242500..2243216 (+) 717 WP_017869691.1 ABC-2 family transporter protein -
  G6R31_RS10865 (G6R31_10865) - 2243213..2244124 (+) 912 WP_152423511.1 ABC-2 family transporter protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21830.20 Da        Isoelectric Point: 6.0101

>NTDB_id=426275 G6R31_RS10840 WP_017869695.1 2239252..2239851(-) (recR) [Deinococcus wulumuqiensis R12]
MKYPPSLVSLIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLASALLEAKRDLHVCPICFNITDAEKCDVCADTSRDQQ
TICVVEEPGDVIAIERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVQQGMEVILATGTTVEGDATALYLQRLLEP
LGADISRIAYGVPVGGSLEYTDEVTLGRALMGRQKVSRT

Nucleotide


Download         Length: 600 bp        

>NTDB_id=426275 G6R31_RS10840 WP_017869695.1 2239252..2239851(-) (recR) [Deinococcus wulumuqiensis R12]
ATGAAATATCCTCCTTCCCTCGTTTCGCTCATCCGTGAACTCTCGCGCTTGCCGGGCATCGGCCCCAAGAGTGCGCAGCG
GCTCGCCTTTCACCTGTTCGAGCAGCCGCGTGAGGACATCGAGCGCCTCGCTTCGGCGCTGCTGGAAGCCAAACGTGACC
TGCACGTCTGCCCCATCTGCTTCAACATCACCGACGCCGAGAAATGCGACGTGTGCGCCGACACCAGCCGCGACCAGCAG
ACCATCTGCGTGGTGGAAGAACCCGGCGACGTCATCGCCATCGAGCGCAGCGGCGAGTACCGGGGGCTGTACCACGTCCT
GCACGGCGTCCTGAGTCCGATGAACGGCGTCGGCCCCGACAAGCTGCACATCAAGCCGCTGCTGCCGCGCGTGCAACAGG
GCATGGAAGTGATTCTGGCGACGGGCACGACGGTGGAAGGCGACGCCACCGCGCTTTACCTTCAGCGCCTGCTCGAACCG
CTGGGGGCCGACATCAGCCGCATCGCCTACGGGGTGCCGGTGGGCGGCTCGCTGGAATACACCGACGAAGTCACGCTGGG
CCGCGCCCTGATGGGCCGCCAGAAGGTGAGCCGGACCTGA

Domains

Predicted by InterproScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(81-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

95.96

99.497

0.955