Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   G6R31_RS08190 Genome accession   NZ_CP049357
Coordinates   1672467..1674497 (-) Length   676 a.a.
NCBI ID   WP_017870522.1    Uniprot ID   -
Organism   Deinococcus wulumuqiensis R12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1667467..1679497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6R31_RS08160 (G6R31_08160) - 1667804..1668079 (-) 276 WP_017870528.1 hypothetical protein -
  G6R31_RS08165 (G6R31_08165) - 1668102..1668953 (-) 852 WP_017870527.1 alpha/beta hydrolase -
  G6R31_RS08170 (G6R31_08170) aroQ 1668950..1669381 (-) 432 WP_017870526.1 type II 3-dehydroquinate dehydratase -
  G6R31_RS08175 (G6R31_08175) aroB 1669413..1670465 (-) 1053 WP_017870525.1 3-dehydroquinate synthase -
  G6R31_RS08180 (G6R31_08180) - 1670452..1671042 (-) 591 WP_040384375.1 shikimate kinase -
  G6R31_RS08185 (G6R31_08185) aroC 1671176..1672324 (-) 1149 WP_017870523.1 chorismate synthase -
  G6R31_RS08190 (G6R31_08190) pilQ 1672467..1674497 (-) 2031 WP_017870522.1 secretin N-terminal domain-containing protein Machinery gene
  G6R31_RS08195 (G6R31_08195) - 1674501..1676474 (-) 1974 WP_017870521.1 hypothetical protein -
  G6R31_RS08200 (G6R31_08200) - 1676471..1677157 (-) 687 WP_017870520.1 GspMb/PilO family protein -
  G6R31_RS08205 (G6R31_08205) - 1677154..1677840 (-) 687 WP_017870519.1 hypothetical protein -
  G6R31_RS08210 (G6R31_08210) - 1677833..1679008 (-) 1176 WP_017870518.1 type IV pilus biogenesis protein PilM -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 70842.81 Da        Isoelectric Point: 6.1518

>NTDB_id=426271 G6R31_RS08190 WP_017870522.1 1672467..1674497(-) (pilQ) [Deinococcus wulumuqiensis R12]
MNKRHALFLTAVLGMATAQNAAPAQAPAPQTGSAALPVSQVAATDPQLSAASVSVETGSYAGPLSSLLAALARSAGYGLI
LDTNLDLSAAANSSAATADQPLAPAGRPVSYSFRAQPFNQVWPLLMDVYGLSYEVVQLGSQPVLRVGNTPIQRIVTLKSA
EATEAATQAKLFFGTPKYTESPRQNEAGQTVGVTRTLIDVELDSKTMRIIADTRNNAVIVRGTNKEVAEVTRLLGQLDQA
AGQTAAGEQAQNQAVRPVQRVYSVRGQTADITALLAAQYPTLRVTPVGQTGQLVLNGAQAQLDTALALLEQVDRPAPVTA
PQNVQRVFQLVNASAEEVKAVLLGQAETRITEQVTSRSTTVTDQTSQPAIPTPSASTNAQAQQQTVSKTVSTPAQEGLLS
QDAPTIIADIRTNKLIVRGTAEQVAQIAELIPQLDQVVPQINVQVRIQEVNERALQSLGLNWRATFGGFNVAVTGGTGLA
ATFNPTQSFLGFNIFPTLTALETQGLTRRVYDGNVTMQSGQRSLSATGGAQNASSSAAASVKSGGRLEINIPSAAGNIVR
QIDYGLNLDFFSPQVAPDGTITLRVRGQVNQPATPITADSLPNLIDFTNSEAQSTITFRNGQTVLMSGLLGSTETSSSSG
VPFLSSLPGIGAAFGEKRNEKTQSQLLVIITGTVVK

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=426271 G6R31_RS08190 WP_017870522.1 1672467..1674497(-) (pilQ) [Deinococcus wulumuqiensis R12]
ATGAATAAACGACACGCCCTTTTCCTGACCGCCGTGCTGGGCATGGCCACCGCTCAGAACGCTGCTCCTGCCCAGGCGCC
CGCGCCGCAGACCGGCAGCGCCGCGCTTCCCGTCTCGCAGGTCGCCGCCACTGACCCGCAGTTGAGTGCGGCCAGTGTCA
GCGTCGAAACCGGCAGCTACGCCGGGCCGCTTTCCAGCCTGCTGGCCGCGCTGGCCCGGTCCGCGGGGTACGGCCTGATC
CTCGACACCAACCTCGACCTGTCGGCCGCGGCCAACTCGTCGGCGGCCACGGCCGACCAGCCCCTCGCCCCGGCGGGCCG
CCCGGTGTCCTACTCGTTCCGCGCTCAGCCGTTCAATCAGGTCTGGCCGCTGCTGATGGACGTGTACGGCCTGAGCTACG
AGGTCGTGCAGCTCGGAAGCCAGCCGGTGTTGCGGGTAGGCAACACCCCGATTCAGCGCATCGTGACGCTCAAGAGCGCG
GAGGCCACCGAAGCGGCCACCCAGGCCAAGCTGTTTTTCGGCACCCCCAAGTACACCGAGTCGCCCCGGCAGAACGAGGC
CGGGCAGACGGTGGGTGTGACGCGCACCCTGATCGATGTCGAACTCGATTCCAAGACCATGCGAATCATCGCGGACACCC
GCAACAACGCGGTGATCGTGCGCGGCACCAACAAGGAAGTGGCGGAAGTCACCCGACTGCTCGGGCAACTCGACCAGGCC
GCCGGTCAGACGGCCGCTGGGGAGCAGGCCCAGAACCAGGCCGTTCGTCCGGTGCAGCGCGTGTACAGCGTGCGCGGCCA
GACCGCCGACATCACGGCGCTGCTGGCGGCCCAGTACCCCACCCTGCGCGTGACCCCCGTGGGACAGACCGGCCAGCTGG
TGCTCAACGGCGCCCAGGCCCAGCTCGATACCGCGCTGGCCCTGCTGGAGCAGGTGGACCGCCCGGCCCCGGTCACTGCG
CCCCAGAATGTTCAGCGTGTCTTTCAACTTGTCAATGCCAGTGCTGAAGAGGTGAAAGCAGTGTTGCTGGGTCAGGCTGA
GACACGGATCACCGAGCAAGTGACCTCCCGAAGCACCACCGTAACTGATCAAACTTCTCAACCGGCCATTCCTACGCCAA
GTGCATCTACAAATGCTCAAGCTCAGCAGCAGACTGTCAGCAAGACGGTTTCCACGCCTGCTCAAGAAGGTCTGCTCAGC
CAGGATGCGCCCACGATCATTGCCGATATCCGCACCAATAAGCTCATCGTGCGCGGCACGGCGGAGCAGGTGGCGCAGAT
CGCAGAACTGATTCCGCAACTCGACCAGGTGGTGCCGCAGATCAACGTGCAGGTGCGCATTCAGGAGGTCAACGAACGGG
CGCTGCAATCGCTGGGCCTGAACTGGCGGGCGACCTTCGGCGGCTTCAACGTGGCGGTGACCGGCGGCACCGGACTGGCC
GCCACCTTCAACCCCACCCAGAGTTTCCTGGGCTTCAACATCTTCCCGACCCTCACGGCGCTCGAAACCCAGGGCCTGAC
CCGGCGCGTGTACGACGGCAACGTGACCATGCAGAGCGGCCAGCGGTCGCTGAGTGCCACGGGCGGCGCCCAGAACGCGT
CGAGCAGCGCGGCGGCGAGCGTCAAGAGCGGTGGGCGACTGGAAATCAACATTCCTTCGGCAGCGGGCAACATCGTCCGG
CAGATCGATTACGGCCTCAACCTCGACTTTTTCAGCCCGCAGGTGGCGCCCGACGGCACCATCACCCTGCGCGTTCGCGG
TCAGGTCAACCAGCCCGCCACGCCTATCACCGCTGACAGCCTGCCCAACCTGATCGACTTCACCAACAGTGAAGCGCAGA
GCACCATCACCTTCAGAAACGGTCAGACGGTCCTGATGAGCGGCCTGCTCGGCAGCACCGAGACGAGCAGCAGCAGCGGC
GTGCCTTTCCTGAGCAGCCTGCCGGGCATCGGCGCGGCCTTCGGGGAAAAGCGCAACGAGAAGACGCAGTCTCAACTGCT
CGTCATCATCACCGGCACGGTCGTCAAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(153-242)

Bacterial type II/III secretion system short domain (Secretin_N)

(326-439)

Bacterial type II and III secretion system protein (Secretin)

(534-676)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

80.328

63.166

0.507