Detailed information NTG0426257

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: G6R31_RS00935
• Genome accession: NZ_CP049357
• Coordinates: 173142..174305 (-)
• Length: 387 a.a.
• NCBI ID: WP_017871052.1
• Uniprot ID: A0AAV4K325
• Organism: Deinococcus wulumuqiensis R12
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 168142..179305

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G6R31_RS00915 (G6R31_00915)	ligA	169284..171410 (+)	2127	WP_017871048.1	NAD-dependent DNA ligase LigA	-
G6R31_RS00920 (G6R31_00920)	-	171482..171880 (+)	399	WP_017871049.1	Asp23/Gls24 family envelope stress response protein	-
G6R31_RS00925 (G6R31_00925)	nusB	171877..172401 (+)	525	WP_017871050.1	transcription antitermination factor NusB	-
G6R31_RS00930 (G6R31_00930)	-	172417..172875 (+)	459	WP_017871051.1	divergent PAP2 family protein	-
G6R31_RS00935 (G6R31_00935)	pilD	173142..174305 (-)	1164	WP_017871052.1	A24 family peptidase	Machinery gene
G6R31_RS00940 (G6R31_00940)	pnp	174709..177060 (-)	2352	WP_017871053.1	polyribonucleotide nucleotidyltransferase	-
G6R31_RS00945 (G6R31_00945)	-	177153..178166 (+)	1014	WP_017871054.1	hypothetical protein	-
G6R31_RS00950 (G6R31_00950)	-	178169..178585 (-)	417	WP_017871055.1	hypothetical protein	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 40777.28 Da
• Isoelectric Point: 8.0032

>NTDB_id=426257 G6R31_RS00935 WP_017871052.1 173142..174305(-) (pilD) [Deinococcus wulumuqiensis R12]
MNADSLIVLFAGLLGLLVGSFSNVLIWRLPRGENIAFPPSHCPKCDHALSPLDLVPLFSWLSLGGKCRYCRAPINPRYPV
VEVLTGIGYAAIAATFPLGVYGAGTLGLMVLFTILLVGSAIDLDTMTIPDELTLPGTLLGVLFGLAGAGVYAREGQLGLP
NVAQAVDGALMGAGVIVLISVFGSWVLRRFRERQWPEMPIGYQQISLGLLAGAWLGPWWGLGAALLSAGVNLAAKKAVRV
PELLTLGGFLVSLTLSSAGTGPGLLDMLRGGLMAAGAVSLVCGVYWWIYWRRNKGAEDDSTDEQSDPVAMGFGDVKLAAV
IGAFLGWERLLLAVVVAIFAGAVLGLVQLALKKENRVKFGPYLALGALVALLWGGPLIAWYRGVLGL

Nucleotide

• Length: 1164 bp

>NTDB_id=426257 G6R31_RS00935 WP_017871052.1 173142..174305(-) (pilD) [Deinococcus wulumuqiensis R12]
GTGAATGCCGACTCCCTCATCGTCCTCTTCGCCGGGCTGCTGGGCCTGCTGGTGGGGTCTTTTTCCAACGTGCTGATCTG
GCGTCTGCCGAGGGGCGAAAACATTGCCTTTCCACCGAGCCACTGCCCCAAGTGTGACCACGCGCTCAGCCCGCTCGACC
TCGTGCCGCTGTTTTCCTGGCTGTCGCTGGGGGGCAAGTGCCGGTATTGCCGCGCGCCCATCAACCCGCGTTATCCGGTG
GTGGAAGTGCTGACGGGTATCGGATACGCCGCCATTGCCGCCACGTTTCCGCTGGGGGTGTACGGGGCGGGCACGCTGGG
GCTGATGGTGCTGTTCACGATTCTGCTCGTCGGCAGCGCGATTGACCTCGACACCATGACCATTCCCGACGAACTGACGC
TGCCCGGCACCCTGCTCGGCGTGCTGTTCGGGCTGGCGGGCGCGGGCGTGTACGCAAGGGAGGGTCAACTGGGCCTGCCC
AACGTGGCGCAGGCGGTGGACGGGGCACTGATGGGGGCAGGCGTCATCGTGCTGATCAGCGTGTTCGGGTCGTGGGTGCT
GCGGCGCTTCCGTGAGCGGCAGTGGCCCGAAATGCCCATCGGCTACCAGCAGATCAGCCTGGGCTTGCTGGCGGGCGCGT
GGCTGGGGCCGTGGTGGGGGCTGGGCGCGGCACTCCTCTCGGCGGGGGTCAACTTGGCCGCAAAGAAGGCCGTGCGGGTG
CCTGAGCTGCTGACCCTGGGCGGCTTTCTGGTCAGTCTGACCCTGAGCAGCGCGGGCACGGGGCCGGGCCTGCTGGACAT
GCTGCGCGGCGGCCTGATGGCGGCGGGCGCCGTGTCCCTCGTGTGCGGCGTGTACTGGTGGATTTACTGGCGGCGCAACA
AGGGGGCCGAGGACGACAGCACCGACGAGCAGAGCGACCCGGTGGCGATGGGCTTCGGGGACGTGAAGCTCGCCGCCGTG
ATCGGGGCCTTTCTGGGCTGGGAGCGGCTGCTGCTGGCGGTGGTGGTGGCGATTTTTGCCGGGGCCGTGCTGGGGCTGGT
GCAACTGGCACTGAAAAAGGAAAACCGCGTCAAATTCGGCCCTTATCTCGCCCTGGGCGCCCTCGTCGCGCTGCTGTGGG
GCGGGCCGCTGATCGCGTGGTATCGGGGCGTGCTGGGGCTGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (238-346)

• Type IV leader peptidase family (Peptidase_A24) (109-227)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-96)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	90.979	100	0.912