Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   G5S32_RS00770 Genome accession   NZ_CP049331
Coordinates   170611..171324 (-) Length   237 a.a.
NCBI ID   WP_165310036.1    Uniprot ID   A0A6G7CEU6
Organism   Vibrio ziniensis strain ZWAL4003     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 165611..176324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S32_RS00740 (G5S32_00740) gspL 165828..167039 (+) 1212 WP_165310030.1 type II secretion system protein GspL -
  G5S32_RS00745 (G5S32_00745) - 167049..167558 (+) 510 WP_165310031.1 type II secretion system protein M -
  G5S32_RS00750 (G5S32_00750) - 167560..168318 (+) 759 WP_165310032.1 type II secretion system protein N -
  G5S32_RS00755 (G5S32_00755) cysQ 168403..169224 (-) 822 WP_165310033.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  G5S32_RS00760 (G5S32_00760) nudE 169251..169793 (-) 543 WP_165310034.1 ADP compounds hydrolase NudE -
  G5S32_RS00765 (G5S32_00765) nfuA 169925..170518 (-) 594 WP_165310035.1 Fe-S biogenesis protein NfuA -
  G5S32_RS00770 (G5S32_00770) comF 170611..171324 (-) 714 WP_165310036.1 ComF family protein Machinery gene
  G5S32_RS00775 (G5S32_00775) bioH 171408..172181 (+) 774 WP_165312689.1 pimeloyl-ACP methyl ester esterase BioH -
  G5S32_RS00780 (G5S32_00780) - 172324..172794 (+) 471 WP_165310037.1 ATP-dependent Lon protease -
  G5S32_RS00785 (G5S32_00785) - 173070..175430 (-) 2361 WP_165310038.1 Tex family protein -
  G5S32_RS00790 (G5S32_00790) - 175528..176145 (-) 618 WP_165310039.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27284.91 Da        Isoelectric Point: 8.6848

>NTDB_id=426139 G5S32_RS00770 WP_165310036.1 170611..171324(-) (comF) [Vibrio ziniensis strain ZWAL4003]
MLSDWFQKANFIHRCLAPQCPICKLALDNKLPYAVCSACEAWYPKYPRCQCCGLATLTPVDMCGQCLTKPTIWHNLYCVG
DYQFPLSNIIHLLKYQRQFWQAKPLAKRLSECIETPAPVITSVPLHWHRYLRRGFNQSDLIAKHLAAFLNVDYQPRLFSR
VLDTKSQQALSKVQRKHNLANAFRLNRRPKCKHVAIVDDVVTTGSTVLHLCQLLLEVGVERIDIYCICRTPEPEDNS

Nucleotide


Download         Length: 714 bp        

>NTDB_id=426139 G5S32_RS00770 WP_165310036.1 170611..171324(-) (comF) [Vibrio ziniensis strain ZWAL4003]
ATGTTATCCGATTGGTTTCAAAAAGCTAATTTTATACACCGTTGCCTTGCGCCACAGTGCCCTATCTGTAAATTGGCATT
AGACAACAAACTACCCTATGCCGTTTGCTCTGCATGTGAAGCTTGGTATCCTAAATATCCTCGTTGCCAATGCTGCGGTT
TAGCAACACTGACACCTGTCGATATGTGTGGTCAATGCCTCACCAAACCAACGATTTGGCATAACTTATATTGTGTGGGT
GACTACCAATTTCCACTAAGCAACATCATTCACCTGCTCAAATATCAGCGGCAGTTCTGGCAAGCGAAACCGTTGGCGAA
ACGCCTCTCTGAATGTATTGAAACTCCGGCACCAGTGATAACCAGCGTCCCACTGCACTGGCATCGATATCTGCGCAGAG
GGTTTAACCAAAGTGATCTTATTGCCAAGCACTTGGCCGCCTTTTTGAATGTTGATTATCAGCCAAGATTGTTTTCTCGA
GTTTTGGATACCAAATCTCAACAAGCACTAAGTAAAGTGCAACGCAAGCACAACTTAGCCAATGCTTTTCGACTTAACCG
ACGGCCAAAGTGCAAACATGTGGCAATAGTGGACGATGTAGTGACAACAGGGAGTACTGTGCTGCATTTATGTCAGTTGC
TACTTGAAGTAGGCGTCGAAAGGATTGATATTTACTGCATATGCCGCACTCCTGAACCAGAAGATAATTCGTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(161-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7CEU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

61.017

99.578

0.608
  comF Vibrio campbellii strain DS40M4

47.5

100

0.481