Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   GYO_RS35775 Genome accession   NC_016047
Coordinates   2752032..2754428 (-) Length   798 a.a.
NCBI ID   WP_014114606.1    Uniprot ID   -
Organism   Bacillus spizizenii TU-B-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2747032..2759428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYO_RS35755 (GYO_2983) - 2749936..2750997 (-) 1062 WP_014114604.1 AI-2E family transporter -
  GYO_RS35760 (GYO_2984) - 2751095..2751226 (-) 132 WP_003225895.1 YrzQ family protein -
  GYO_RS35765 (GYO_2985) - 2751248..2751439 (-) 192 WP_003225893.1 hypothetical protein -
  GYO_RS35770 (GYO_2986) - 2751451..2751975 (-) 525 WP_080010096.1 PRC-barrel domain-containing protein -
  GYO_RS35775 (GYO_2987) recD2 2752032..2754428 (-) 2397 WP_014114606.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GYO_RS35780 (GYO_2988) - 2754454..2755074 (-) 621 WP_238528881.1 tetratricopeptide repeat protein -
  GYO_RS35785 (GYO_2989) mnmA 2755160..2756275 (-) 1116 WP_014114608.1 tRNA 2-thiouridine(34) synthase MnmA -
  GYO_RS35790 (GYO_2990) - 2756303..2757445 (-) 1143 WP_014114609.1 cysteine desulfurase family protein -
  GYO_RS35795 (GYO_2991) cymR 2757464..2757880 (-) 417 WP_003225879.1 cysteine metabolism transcriptional regulator CymR -
  GYO_RS35800 (GYO_2992) - 2758082..2759347 (+) 1266 WP_041521021.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89160.75 Da        Isoelectric Point: 5.0705

>NTDB_id=42602 GYO_RS35775 WP_014114606.1 2752032..2754428(-) (recD2) [Bacillus spizizenii TU-B-10]
MQQHPDQLKLEEEPYLKGTVNTVIYHNDTNLYTVLKVKVTETSEAIEDKAVSVTGYFPALQEEETYTFYGKIVTHPKFGL
QFQAEHFKKEIPTTKEGIIQYLSSDLFEGIGKKTAEEIVKKLGDSAINKILADASVLYDVPRLSKKKADTLAGALQRHQG
LEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVKDVEGIGFGKADELGSRMGLSGNHPERVKAAILYTLETT
CLSEGHTYIETEQLIIDTQSLLNQSAREGQHITEMDAANAIIALGENKDIVIEDGRCYFPSLFYAEQNVAKRVKHIASQT
EYDDQFPESEFLLALGELEERMNVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSAYKKD
EAFPVVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHTEDQPIEGKLLIIDEASMLDIWLANHLFKAIPDHIQI
IIVGDEDQLPSVGPGQVLRDLLASKVIPTVRLTDIYRQAEGSSIVELAHQMKNGLLPNNLTAPTKDRSFIRCGGSQIKEV
VEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGD
IGEITSIFYAKENTEKEDMAVVNFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAIT
RAKKFLILCGEEEALEWGVKNNDATVRQTSLKNRLSLQIEEMDAELEALQKELPFSVHDANIGMEGITPFDFMKEEQP

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=42602 GYO_RS35775 WP_014114606.1 2752032..2754428(-) (recD2) [Bacillus spizizenii TU-B-10]
GTGCAGCAGCATCCGGATCAGCTTAAACTGGAGGAAGAGCCCTATTTAAAGGGGACAGTCAACACAGTCATCTATCATAA
CGACACCAATTTATATACGGTTCTGAAAGTAAAAGTCACAGAGACCTCCGAAGCGATTGAAGATAAAGCCGTATCCGTGA
CGGGCTACTTCCCTGCGCTTCAAGAAGAAGAGACCTACACGTTTTACGGAAAGATCGTAACCCATCCAAAATTCGGGCTC
CAATTTCAGGCGGAGCATTTCAAAAAGGAGATCCCGACGACTAAGGAAGGCATCATTCAGTATTTATCGAGTGATTTGTT
CGAGGGAATCGGCAAAAAAACAGCTGAAGAAATTGTGAAAAAGCTGGGCGACAGTGCCATTAATAAAATTTTGGCCGACG
CTTCAGTGCTTTATGATGTTCCGAGACTGTCAAAAAAGAAAGCTGATACGTTAGCCGGCGCTTTGCAACGGCATCAGGGA
CTTGAGCAAATCATGATTTCCCTGAATCAGTTCGGCTTTGGCCCTCAGCTGTCTATGAAAATCTATCAGGCCTATGAATC
CGAGACGCTTGAAAAGATTCAGGAAAACCCTTATCAGCTTGTGAAAGATGTAGAAGGGATCGGGTTTGGGAAAGCGGATG
AGCTTGGCAGCAGAATGGGACTTTCGGGTAATCATCCTGAGCGGGTAAAAGCCGCCATTTTGTACACGCTTGAAACGACT
TGTCTGTCAGAAGGGCATACGTACATAGAAACGGAGCAGCTGATTATCGACACCCAATCACTGTTGAACCAGTCAGCAAG
GGAAGGACAGCACATCACAGAAATGGATGCCGCTAACGCGATTATTGCCCTTGGAGAAAATAAAGACATTGTCATAGAAG
ACGGCCGCTGTTATTTTCCATCGCTGTTTTACGCAGAACAAAACGTTGCAAAGCGTGTGAAACATATCGCAAGCCAAACC
GAATATGATGACCAGTTTCCTGAATCAGAATTTCTGCTCGCTTTAGGAGAACTGGAAGAACGGATGAATGTTCAGTATGC
CCCGAGCCAGAAGGAAGCGATTCAAAAAGCCCTTTCCTCACCGATGCTTCTTTTAACGGGAGGCCCGGGAACAGGGAAAA
CGACGGTAATCAGAGGAATTGTCGAACTATACGGAGAGCTTCACGGCGTGTCACTAGACCCGTCAGCTTATAAAAAGGAT
GAAGCTTTTCCGGTTGTATTGGCCGCACCGACAGGAAGAGCGGCGAAACGGATGAGTGAATCAACGGGTCTTCCGGCAGT
CACGATACACAGGCTGCTTGGCTGGAACGGCGCTGAAGGCTTTACCCATACAGAGGATCAGCCGATCGAAGGAAAGCTGT
TAATTATCGATGAAGCCAGCATGCTTGATATATGGCTGGCGAACCACTTGTTCAAGGCGATCCCTGATCATATTCAAATC
ATCATTGTCGGAGATGAAGATCAACTGCCTTCTGTCGGTCCGGGCCAAGTGCTGAGAGACCTTTTGGCATCTAAGGTAAT
TCCGACTGTGAGACTGACAGACATCTACCGCCAGGCTGAGGGGTCATCAATCGTTGAGCTTGCCCACCAGATGAAAAATG
GATTGCTGCCGAACAATTTGACTGCCCCGACGAAGGACCGTTCCTTTATTCGCTGCGGTGGCTCGCAAATAAAAGAAGTA
GTCGAAAAGGTTGTCGCCAATGCATTGAAAAAAGGCTATACGGCAAAGGACATACAGGTTCTCGCCCCGATGTACAGAGG
GAAAGCAGGCATCAATGAACTGAACGTGATGCTGCAGGACATCTTGAATCCTCCTAAAGAAAAACGGAGAGAATTGAAGT
TCGGAGATGTTGTCTACAGAACCGGAGATAAAATTTTGCAGCTTGTCAATCAGCCGGAAAACAATGTGTTCAACGGAGAT
ATTGGCGAAATCACGTCGATATTTTATGCGAAGGAAAATACAGAAAAAGAAGACATGGCCGTTGTTAATTTTGACGGCAA
TGAAATGACATTTACGAAAAAAGATTTTAACCAGTTTACCCATGCGTATTGCTGCTCTATTCATAAATCGCAGGGAAGTG
AATTTCCGATTGTGGTTTTGCCTGTTGTAAAAGGCTACTATAGAATGCTCAGAAGAAACCTTCTTTATACAGCTATTACA
AGAGCAAAGAAATTTCTCATTTTATGCGGGGAAGAGGAGGCGCTGGAGTGGGGCGTAAAAAATAATGACGCAACTGTCAG
GCAGACTTCCTTGAAAAACAGGCTGTCATTACAGATTGAGGAAATGGATGCCGAGCTTGAGGCTTTGCAAAAAGAGCTCC
CGTTCAGTGTGCACGATGCCAATATTGGTATGGAAGGCATTACACCATTCGATTTTATGAAAGAAGAACAGCCGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-664)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

AAA domain (AAA_30)

(346-553)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

98.871

99.875

0.987

Multiple sequence alignment