Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GYO_RS31040 Genome accession   NC_016047
Coordinates   1793703..1794482 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus spizizenii TU-B-10     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1788703..1799482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYO_RS31020 (GYO_1967) trmFO 1789396..1790703 (+) 1308 WP_014113783.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  GYO_RS31025 (GYO_1968) xerC 1790771..1791685 (+) 915 WP_014113784.1 tyrosine recombinase XerC -
  GYO_RS31030 (GYO_1969) clpQ 1791698..1792243 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  GYO_RS31035 (GYO_1970) hslU 1792260..1793663 (+) 1404 WP_014113785.1 HslU--HslV peptidase ATPase subunit -
  GYO_RS31040 (GYO_1971) codY 1793703..1794482 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GYO_RS31045 (GYO_1972) flgB 1794864..1795253 (+) 390 WP_014113786.1 flagellar basal body rod protein FlgB -
  GYO_RS31050 (GYO_1973) flgC 1795253..1795705 (+) 453 WP_014113787.1 flagellar basal body rod protein FlgC -
  GYO_RS31055 (GYO_1974) fliE 1795717..1796037 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  GYO_RS31060 (GYO_1975) fliF 1796083..1797693 (+) 1611 WP_080010075.1 flagellar basal-body MS-ring/collar protein FliF -
  GYO_RS31065 (GYO_1976) fliG 1797706..1798722 (+) 1017 WP_003220860.1 flagellar motor switch protein FliG -
  GYO_RS31070 (GYO_1977) fliH 1798715..1799467 (+) 753 WP_014113789.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=42582 GYO_RS31040 WP_003220850.1 1793703..1794482(+) (codY) [Bacillus spizizenii TU-B-10]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=42582 GYO_RS31040 WP_003220850.1 1793703..1794482(+) (codY) [Bacillus spizizenii TU-B-10]
ATGGCTTTATTACAAAAAACACGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGTAAGCTCCTTGGATATTCTATTA
ACCAGCAAATTGAAAATGATCGCATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGACATTAATAGTGAATATACTGCTTTTCCTGTTGAAAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTACCGATCATCGGAGGCGGAGAAAGATTAGGAACACTCATTCTTTCACGTTTACAGGATC
AATTTAATGACGATGACTTAATTCTCGCTGAATACGGCGCTACAGTTGTCGGTATGGAGATCCTGAGAGAAAAAGCAGAA
GAAATCGAAGAGGAAGCAAGAAGCAAAGCTGTCGTTCAAATGGCTATCAGTTCTCTTTCTTACAGCGAGCTTGAAGCAAT
TGAGCACATTTTTGAAGAGCTTGACGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATCGCTGACCGCGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAAAGCGCGGGTGTTATCGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTCCTAAACAATAAATTCCTAATCGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment