Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HPPC18_RS02090 Genome accession   NC_017742
Coordinates   423957..425132 (-) Length   391 a.a.
NCBI ID   WP_000059582.1    Uniprot ID   -
Organism   Helicobacter pylori PeCan18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 418957..430132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPC18_RS02055 - 419267..419581 (+) 315 WP_000868001.1 hypothetical protein -
  HPPC18_RS02060 (HPPC18_02060) - 419559..420326 (+) 768 WP_000602329.1 RNA polymerase sigma factor FliA -
  HPPC18_RS02065 (HPPC18_02065) fliM 420319..421383 (+) 1065 WP_000763582.1 flagellar motor switch protein FliM -
  HPPC18_RS02070 (HPPC18_02070) fliY 421387..422259 (+) 873 WP_001150680.1 flagellar motor switch protein FliY -
  HPPC18_RS02075 (HPPC18_02075) - 422288..422824 (+) 537 WP_000964005.1 YhcH/YjgK/YiaL family protein -
  HPPC18_RS02080 (HPPC18_02080) - 422821..423324 (+) 504 WP_000780243.1 DUF2147 domain-containing protein -
  HPPC18_RS02085 (HPPC18_02085) fur 423345..423797 (-) 453 WP_001253272.1 ferric iron uptake transcriptional regulator -
  HPPC18_RS02090 (HPPC18_02090) rarA 423957..425132 (-) 1176 WP_000059582.1 replication-associated recombination protein A Machinery gene
  HPPC18_RS02095 (HPPC18_02095) - 425129..425500 (-) 372 WP_000332999.1 heat shock protein transcriptional repressor HspR -
  HPPC18_RS02100 (HPPC18_02100) - 425510..426376 (-) 867 WP_000045884.1 DnaJ family protein -
  HPPC18_RS02105 (HPPC18_02105) - 426544..427794 (+) 1251 WP_001199540.1 hypothetical protein -
  HPPC18_RS02110 (HPPC18_02110) - 427902..428738 (-) 837 WP_000556225.1 5'-3' exonuclease -
  HPPC18_RS02115 (HPPC18_02115) - 428993..429889 (-) 897 WP_000697567.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43842.55 Da        Isoelectric Point: 8.9191

>NTDB_id=42524 HPPC18_RS02090 WP_000059582.1 423957..425132(-) (rarA) [Helicobacter pylori PeCan18]
MSLTALLNPTSLEDFLGQEHLIGKDAPLFKALKSKHFPHAFFYGPPGVGKTSLAQIIARSLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDRLCDK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIENPITLKTLKSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLASSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
KAINQALDCVQKGSLYPIPKHLLPHSKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=42524 HPPC18_RS02090 WP_000059582.1 423957..425132(-) (rarA) [Helicobacter pylori PeCan18]
ATGAGCCTGACTGCGCTTTTAAACCCCACAAGCCTAGAAGATTTTTTAGGTCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCTTAAAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCTCGCTCCCTAGAGCGCCCCATTCTTTTGTTTAATGCGACGGATTTCAAATTAGAGGATTTGCGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAGCCTGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCTTAAAAAAGAGCGATTTAGACAGGCTTTGCGATAAG
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTGAATAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAAAAACGCTCAAATCCTTACGGCCCCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTCACTAGCGCGCTCATTAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCTCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AAAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGTTGCCTCATTCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTCAATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.864

100

0.399

Multiple sequence alignment