Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HPSH112_RS02335 Genome accession   NC_017741
Coordinates   478275..479450 (-) Length   391 a.a.
NCBI ID   WP_000060221.1    Uniprot ID   -
Organism   Helicobacter pylori Shi112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 473275..484450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSH112_RS02300 (HPSH112_02345) - 473562..473876 (+) 315 WP_000868006.1 hypothetical protein -
  HPSH112_RS02305 (HPSH112_02350) - 473854..474630 (+) 777 WP_000602374.1 RNA polymerase sigma factor FliA -
  HPSH112_RS02310 (HPSH112_02355) fliM 474623..475687 (+) 1065 WP_000763580.1 flagellar motor switch protein FliM -
  HPSH112_RS02315 (HPSH112_02360) fliY 475691..476581 (+) 891 WP_001150673.1 flagellar motor switch protein FliY -
  HPSH112_RS02320 (HPSH112_02365) - 476610..477146 (+) 537 WP_000964052.1 YhcH/YjgK/YiaL family protein -
  HPSH112_RS02325 (HPSH112_02370) - 477143..477643 (+) 501 WP_000780267.1 DUF2147 domain-containing protein -
  HPSH112_RS02330 (HPSH112_02375) fur 477663..478115 (-) 453 WP_000824987.1 ferric iron uptake transcriptional regulator -
  HPSH112_RS02335 (HPSH112_02380) rarA 478275..479450 (-) 1176 WP_000060221.1 replication-associated recombination protein A Machinery gene
  HPSH112_RS02340 (HPSH112_02385) - 479447..479818 (-) 372 WP_000333000.1 heat shock protein transcriptional repressor HspR -
  HPSH112_RS02345 (HPSH112_02390) - 479828..480694 (-) 867 WP_000045803.1 DnaJ family protein -
  HPSH112_RS02350 (HPSH112_02395) - 480862..482112 (+) 1251 WP_001199604.1 hypothetical protein -
  HPSH112_RS02355 (HPSH112_02400) - 482177..483043 (-) 867 WP_080024693.1 5'-3' exonuclease -
  HPSH112_RS02360 (HPSH112_02405) - 483279..484175 (-) 897 WP_000697556.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43785.42 Da        Isoelectric Point: 7.7629

>NTDB_id=42485 HPSH112_RS02335 WP_000060221.1 478275..479450(-) (rarA) [Helicobacter pylori Shi112]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLLSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=42485 HPSH112_RS02335 WP_000060221.1 478275..479450(-) (rarA) [Helicobacter pylori Shi112]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGTCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTTAAGCTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATTCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGTGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTGAATGACGGATCTTATAGTGATGATACGCATTATAATCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATTTATTATTTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCTAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCTCTAAATTTAGCCGCTTCTTGCTTGCTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTGGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

36.893

100

0.389

Multiple sequence alignment