Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ST64987_RS06700 Genome accession   NZ_CP049053
Coordinates   1269823..1270752 (-) Length   309 a.a.
NCBI ID   WP_082245810.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST64987     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1264823..1275752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST64987_RS06675 (ST64987_1265) - 1265474..1265851 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  ST64987_RS06680 (ST64987_1266) - 1265856..1266554 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  ST64987_RS06685 (ST64987_1267) - 1266566..1267351 (+) 786 WP_011681414.1 hypothetical protein -
  ST64987_RS06690 - 1267429..1268315 (-) 887 Protein_1230 transposase -
  ST64987_RS06695 (ST64987_1269) - 1268511..1269767 (+) 1257 WP_011680631.1 ISL3 family transposase -
  ST64987_RS06700 (ST64987_1270) amiF 1269823..1270752 (-) 930 WP_082245810.1 ATP-binding cassette domain-containing protein Regulator
  ST64987_RS06705 (ST64987_1271) amiE 1270745..1271830 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  ST64987_RS06710 (ST64987_1272) amiD 1271840..1272766 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  ST64987_RS06715 (ST64987_1273) amiC 1272766..1274259 (-) 1494 WP_167401557.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35143.27 Da        Isoelectric Point: 6.5989

>NTDB_id=424484 ST64987_RS06700 WP_082245810.1 1269823..1270752(-) (amiF) [Streptococcus thermophilus strain ST64987]
MPEKLVEVKDVEISFGEGKKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=424484 ST64987_RS06700 WP_082245810.1 1269823..1270752(-) (amiF) [Streptococcus thermophilus strain ST64987]
ATGCCTGAGAAATTAGTTGAAGTAAAAGATGTGGAAATTTCCTTCGGCGAAGGAAAAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCACACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAATAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

99.676

100

0.997
  amiF Streptococcus thermophilus LMD-9

99.353

100

0.994
  amiF Streptococcus salivarius strain HSISS4

98.058

100

0.981