Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HPSH169_RS02245 Genome accession   NC_017740
Coordinates   455756..456931 (-) Length   391 a.a.
NCBI ID   WP_000060220.1    Uniprot ID   -
Organism   Helicobacter pylori Shi169     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 450756..461931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSH169_RS02210 (HPSH169_02260) - 451065..451379 (+) 315 WP_000868000.1 hypothetical protein -
  HPSH169_RS02215 (HPSH169_02265) - 451357..452133 (+) 777 WP_000602378.1 RNA polymerase sigma factor FliA -
  HPSH169_RS02220 (HPSH169_02270) fliM 452126..453190 (+) 1065 WP_000763580.1 flagellar motor switch protein FliM -
  HPSH169_RS02225 (HPSH169_02275) fliY 453194..454066 (+) 873 WP_001150964.1 flagellar motor switch protein FliY -
  HPSH169_RS02230 (HPSH169_02280) - 454094..454630 (+) 537 WP_000964033.1 YhcH/YjgK/YiaL family protein -
  HPSH169_RS02235 (HPSH169_02285) - 454627..455124 (+) 498 WP_000780266.1 DUF2147 domain-containing protein -
  HPSH169_RS02240 (HPSH169_02290) fur 455144..455596 (-) 453 WP_000824987.1 ferric iron uptake transcriptional regulator -
  HPSH169_RS02245 (HPSH169_02295) rarA 455756..456931 (-) 1176 WP_000060220.1 replication-associated recombination protein A Machinery gene
  HPSH169_RS02250 (HPSH169_02300) - 456928..457299 (-) 372 WP_000333000.1 heat shock protein transcriptional repressor HspR -
  HPSH169_RS02255 (HPSH169_02305) - 457309..458175 (-) 867 WP_000045782.1 DnaJ family protein -
  HPSH169_RS02260 (HPSH169_02310) - 458343..459593 (+) 1251 WP_001199601.1 hypothetical protein -
  HPSH169_RS02265 (HPSH169_02315) - 459662..460528 (-) 867 WP_080024970.1 5'-3' exonuclease -
  HPSH169_RS02270 (HPSH169_02325) - 460754..461650 (-) 897 WP_000697566.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43732.37 Da        Isoelectric Point: 7.4528

>NTDB_id=42445 HPSH169_RS02245 WP_000060220.1 455756..456931(-) (rarA) [Helicobacter pylori Shi169]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLACLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLLSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=42445 HPSH169_RS02245 WP_000060220.1 455756..456931(-) (rarA) [Helicobacter pylori Shi169]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGTCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTTAAGCTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATTCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGTGATGATACGCATTATAATCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATTTATTATTTGGCGTGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCTAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCTCTAAATTTAGCCGCTTCTTGCTTGCTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

36.65

100

0.386