Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPSH169_RS01030 Genome accession   NC_017740
Coordinates   204179..204439 (+) Length   86 a.a.
NCBI ID   WP_000602756.1    Uniprot ID   -
Organism   Helicobacter pylori Shi169     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 199179..209439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSH169_RS08425 (HPSH169_01030) - 199497..199616 (-) 120 WP_001156401.1 glycosyltransferase family 8 protein -
  HPSH169_RS01010 (HPSH169_01035) hofA 199770..201122 (+) 1353 WP_014662069.1 outer membrane beta-barrel protein HofA -
  HPSH169_RS01015 (HPSH169_01040) - 201195..201959 (+) 765 WP_000667751.1 hypothetical protein -
  HPSH169_RS01020 (HPSH169_01045) - 201970..203886 (+) 1917 WP_000332150.1 toprim domain-containing protein -
  HPSH169_RS01025 (HPSH169_01050) - 203876..204178 (+) 303 WP_000649843.1 TrbC/VirB2 family protein -
  HPSH169_RS01030 (HPSH169_01055) comB3 204179..204439 (+) 261 WP_000602756.1 hypothetical protein Machinery gene
  HPSH169_RS01040 (HPSH169_01065) - 204452..206943 (+) 2492 Protein_198 FtsK/SpoIIIE domain-containing protein -
  HPSH169_RS01045 (HPSH169_01070) - 206936..208870 (+) 1935 WP_000277568.1 type IA DNA topoisomerase -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10154.04 Da        Isoelectric Point: 4.6082

>NTDB_id=42436 HPSH169_RS01030 WP_000602756.1 204179..204439(+) (comB3) [Helicobacter pylori Shi169]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=42436 HPSH169_RS01030 WP_000602756.1 204179..204439(+) (comB3) [Helicobacter pylori Shi169]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453

Multiple sequence alignment