Detailed information NTG0042423

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: LIV_RS07475
• Genome accession: NC_016011
• Coordinates: 1527597..1529990 (-)
• Length: 797 a.a.
• NCBI ID: WP_014092872.1
• Uniprot ID: -
• Organism: Listeria ivanovii subsp. ivanovii PAM 55
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1522597..1534990

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LIV_RS07455 (LIV_1461)	-	1523057..1523752 (-)	696	WP_014092868.1	ABC transporter ATP-binding protein	-
LIV_RS07460 (LIV_1462)	-	1523761..1525269 (-)	1509	WP_014092869.1	ABC transporter permease	-
LIV_RS07465 (LIV_1463)	pieR	1525436..1526122 (+)	687	WP_014092870.1	two component system response regulator PieR	-
LIV_RS07470 (LIV_1464)	pieS	1526119..1527558 (+)	1440	WP_014092871.1	two component system sensor histidine kinase PieS	-
LIV_RS07475 (LIV_1465)	recD2	1527597..1529990 (-)	2394	WP_014092872.1	ATP-dependent RecD-like DNA helicase	Machinery gene
LIV_RS07480 (LIV_1466)	-	1530016..1530654 (-)	639	WP_014092873.1	tetratricopeptide repeat protein	-
LIV_RS07485 (LIV_1467)	-	1530697..1531437 (-)	741	WP_014092874.1	alpha/beta hydrolase	-
LIV_RS07490 (LIV_1468)	mnmA	1531556..1532671 (-)	1116	WP_014092875.1	tRNA 2-thiouridine(34) synthase MnmA	-
LIV_RS07495 (LIV_1469)	-	1532690..1533838 (-)	1149	WP_014092876.1	cysteine desulfurase family protein	-

Sequence

Protein

• Length: 797 a.a.
• Molecular weight: 90173.40 Da
• Isoelectric Point: 4.9444

>NTDB_id=42423 LIV_RS07475 WP_014092872.1 1527597..1529990(-) (recD2) [Listeria ivanovii subsp. ivanovii PAM 55]
MAEQESLALFDTPEELFMKGTMLSTIFYNAENLFSVVRILVKETNADWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAKF
GQQFKAERFRKEMPQSRAGLINYLSGELFKGIGKVTAENIVDTIGDDAITRILSDPSLLNNVPKLPSGAAESLLASLREN
QGLEHVMVGLNEYGFGPQLSMKIFQAYKQNAIEVLENNPYKLIEDVKGIGFHRADELGRKLGLGGNHPERLRAGILFMLD
SVCMQQGHVYMEQEALLAEVTFLLEESEGIRIDHAILMEQIEKLAEEQKIIMENTRVYMPSLYYSESGFAYHVKRMLKQT
QYQEQFPQSEFLLALGELEERIGVHYGDSQREALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVSLDPHAYKDG
ATFPVLLAAPTGRAAKRMSESTGLPSMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPSHMQV
VLVGDQDQLPSVGPGQVLKDILHSKQIPTVALSDIYRQKDGSSIIEMAHNIKEGMLPADFAKNSADRSFFHCTVNQIGDV
VEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGELKYRIHDKVLQLINQPEKNVFNG
DIGEIVSIIYEKENTEKQDMIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTGV
TRSKQFLILCGEEEAFRMGVERVDENKRNTTLSERLISEDVMLEQMTNKRILTIENITEIDPMIGMEGITPNQFMAG

Nucleotide

• Length: 2394 bp

>NTDB_id=42423 LIV_RS07475 WP_014092872.1 1527597..1529990(-) (recD2) [Listeria ivanovii subsp. ivanovii PAM 55]
ATGGCTGAACAAGAATCTCTCGCTTTATTTGACACGCCAGAAGAGCTTTTTATGAAGGGCACGATGTTGTCCACCATTTT
TTATAATGCCGAAAACCTCTTTTCTGTTGTGCGAATTCTTGTCAAAGAAACCAATGCAGATTGGGATGAAAAAGATATTA
TTGTGACTGGTTTTTTCCCCGCTTTACATGAACAAGAAGTGTATACTTTTTATGGGAAAATGCAGGAACATGCCAAATTT
GGACAGCAATTTAAAGCAGAACGTTTTAGGAAAGAAATGCCGCAATCTCGTGCTGGTTTAATTAATTATCTGTCTGGTGA
GCTTTTTAAAGGTATTGGCAAAGTGACTGCGGAAAATATTGTTGATACAATTGGCGACGATGCAATTACGCGGATTTTAT
CTGATCCAAGTTTACTTAATAATGTTCCAAAGTTACCATCTGGTGCTGCGGAGAGCCTCCTTGCTTCTTTACGAGAAAAT
CAAGGCTTAGAGCATGTGATGGTCGGGCTAAATGAATATGGATTTGGTCCACAACTTTCGATGAAGATTTTTCAAGCATA
TAAACAAAATGCTATCGAAGTACTTGAAAACAATCCATACAAATTAATTGAGGATGTCAAAGGTATTGGATTTCACCGAG
CGGATGAGCTTGGTCGGAAATTAGGACTAGGAGGAAATCATCCTGAACGCCTTCGTGCGGGAATTTTATTTATGCTTGAT
TCTGTATGCATGCAACAAGGCCATGTTTATATGGAACAAGAAGCGCTACTTGCAGAAGTGACCTTTTTGCTAGAAGAAAG
TGAAGGTATTCGAATTGATCATGCTATTTTAATGGAACAAATAGAAAAGCTTGCTGAAGAACAAAAAATTATCATGGAAA
ACACACGTGTCTATATGCCATCTTTATATTATTCGGAAAGCGGCTTTGCTTATCATGTAAAACGGATGCTGAAACAAACA
CAGTATCAAGAGCAATTTCCGCAGTCTGAGTTCTTGCTGGCACTTGGAGAGTTAGAAGAGCGAATTGGTGTTCATTACGG
AGATTCGCAGCGAGAGGCGTTAGAGCAAGCTTTAATGTCGCCGATGCTTGTACTTACTGGTGGACCAGGAACAGGGAAGA
CTACTGTTATTAAAGGTATTGTGGAATTATATGCCGAATTAAATGGTGTAAGTCTAGACCCGCATGCTTATAAAGATGGC
GCGACGTTTCCAGTTCTGTTAGCGGCACCAACTGGACGAGCAGCTAAGCGAATGTCTGAGTCAACAGGACTTCCATCAAT
GACCATTCACCGTTTACTCGGTATGAATGGGCAAGAGCAAATGGATGATGATGCAGAAAGATTAATTGATGGTCGGCTTT
TAATTGTAGATGAAATGTCGATGGTGGATATTTGGCTTGCTAACCAACTATTTCGTGCACTTCCTTCGCATATGCAAGTA
GTTTTAGTAGGAGACCAAGACCAATTGCCATCAGTTGGACCAGGACAGGTCTTGAAAGATATACTTCACTCGAAACAAAT
TCCAACCGTTGCGCTTTCAGATATTTATAGGCAAAAAGATGGATCTTCCATTATTGAGATGGCTCATAATATTAAAGAAG
GCATGTTGCCAGCTGATTTTGCGAAAAATAGTGCTGATCGTTCTTTCTTTCACTGTACCGTGAATCAAATTGGTGATGTC
GTTGAACAAGTCGTAAAAAATGCCAAAAATAAAGGTTTCCGCGCAAAAGATATTCAAGTTTTAGCACCGATGTATCGTGG
CCCGGCTGGAATCGATATTTTAAATAAAAAGCTACAAGAAATTTTTAATCCTAATGACACTGGCAGACGTAAAGAAGTGC
AATTTGGCGAATTAAAATATCGTATACATGATAAAGTTTTGCAGTTAATAAATCAACCGGAAAAAAATGTCTTTAACGGC
GATATCGGGGAAATAGTATCGATTATTTATGAGAAGGAAAACACCGAAAAGCAAGATATGATTGTTGTGCAATTTGATCA
AACCGAAGTATCCTATTACCGGCAAGAATTTAATCAATTGACGCATGCTTATTGTTGTTCTATTCATAAAGCACAAGGTA
GCGAGTTTCCCATTGTGATTATGCCAATTGTTCGTAGCTATTACCGAATGTTACGACGTGACTTGTTATATACGGGTGTC
ACTCGAAGCAAGCAATTTTTGATTCTTTGCGGTGAAGAAGAGGCGTTTCGAATGGGTGTTGAGCGTGTCGATGAAAACAA
ACGTAATACGACGCTTTCAGAACGTTTAATAAGTGAAGATGTTATGCTCGAACAAATGACCAATAAACGAATTTTAACTA
TCGAAAATATTACCGAAATAGATCCGATGATTGGGATGGAAGGAATAACCCCCAACCAATTTATGGCAGGCTAA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (594-665)

• Helix-hairpin-helix containing domain (HHH_RecD2) (159-250)

• AAA domain (AAA_30) (346-553)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (682-730)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	57.234	98.871	0.566