Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   IGW72_RS19095 Genome accession   NZ_CP062219
Coordinates   4164748..4165272 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain JT86     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4159748..4170272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGW72_RS19080 aroB 4160864..4161970 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  IGW72_RS19085 aroK 4162020..4162538 (-) 519 WP_003095833.1 shikimate kinase AroK -
  IGW72_RS19090 pilQ 4162550..4164694 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  IGW72_RS19095 comL/pilP 4164748..4165272 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  IGW72_RS19100 pilO 4165269..4165892 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  IGW72_RS19105 pilN 4165889..4166485 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  IGW72_RS19110 pilM 4166485..4167549 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  IGW72_RS19115 - 4167734..4170202 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=424204 IGW72_RS19095 WP_003095836.1 4164748..4165272(-) (comL/pilP) [Pseudomonas aeruginosa strain JT86]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=424204 IGW72_RS19095 WP_003095836.1 4164748..4165272(-) (comL/pilP) [Pseudomonas aeruginosa strain JT86]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362