Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HPSH417_RS05480 | Genome accession | NC_017739 |
| Coordinates | 1150750..1151010 (+) | Length | 86 a.a. |
| NCBI ID | WP_000602756.1 | Uniprot ID | - |
| Organism | Helicobacter pylori Shi417 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1145750..1156010
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPSH417_RS05450 (HPSH417_05490) | proC | 1146365..1147159 (+) | 795 | WP_000404481.1 | pyrroline-5-carboxylate reductase | - |
| HPSH417_RS05455 (HPSH417_05495) | fic | 1147165..1147698 (+) | 534 | WP_000549912.1 | protein adenylyltransferase Fic | - |
| HPSH417_RS05460 (HPSH417_05500) | - | 1147768..1148532 (+) | 765 | WP_000667751.1 | hypothetical protein | - |
| HPSH417_RS05465 | - | 1148543..1150457 (+) | 1915 | Protein_1057 | toprim domain-containing protein | - |
| HPSH417_RS05475 (HPSH417_05515) | - | 1150447..1150749 (+) | 303 | WP_000649843.1 | TrbC/VirB2 family protein | - |
| HPSH417_RS05480 (HPSH417_05520) | comB3 | 1150750..1151010 (+) | 261 | WP_000602756.1 | hypothetical protein | Machinery gene |
| HPSH417_RS05485 (HPSH417_05525) | - | 1151023..1153521 (+) | 2499 | WP_000478384.1 | VirB4 family type IV secretion system protein | - |
| HPSH417_RS05490 (HPSH417_05530) | - | 1153514..1155448 (+) | 1935 | WP_000277569.1 | type IA DNA topoisomerase | - |
| HPSH417_RS08795 (HPSH417_05535) | - | 1155448..1155576 (+) | 129 | WP_000243255.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 86 a.a. Molecular weight: 10154.04 Da Isoelectric Point: 4.6082
>NTDB_id=42411 HPSH417_RS05480 WP_000602756.1 1150750..1151010(+) (comB3) [Helicobacter pylori Shi417]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA
Nucleotide
Download Length: 261 bp
>NTDB_id=42411 HPSH417_RS05480 WP_000602756.1 1150750..1151010(+) (comB3) [Helicobacter pylori Shi417]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
44.828 |
100 |
0.453 |