Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   G4V55_RS02315 Genome accession   NZ_CP048893
Coordinates   447364..448029 (+) Length   221 a.a.
NCBI ID   WP_047918678.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SRRSH240     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 442364..453029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V55_RS02290 cysT 442639..443468 (-) 830 Protein_450 sulfate ABC transporter permease subunit CysT -
  G4V55_RS02295 - 443654..443986 (+) 333 WP_003687908.1 hypothetical protein -
  G4V55_RS02300 - 444317..444826 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  G4V55_RS02305 - 445058..445639 (-) 582 WP_047923823.1 superoxide dismutase -
  G4V55_RS02310 dnaB 445803..447209 (+) 1407 WP_047917169.1 replicative DNA helicase -
  G4V55_RS02315 pilH 447364..448029 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  G4V55_RS02320 pilV 448061..448672 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  G4V55_RS02325 pilJ 448669..449649 (+) 981 WP_010951046.1 PilW family protein Machinery gene
  G4V55_RS02330 pilK 449628..450239 (+) 612 WP_003687918.1 pilus assembly protein Machinery gene
  G4V55_RS02335 pilL 450241..450717 (+) 477 WP_203004379.1 PilX family type IV pilin Machinery gene
  G4V55_RS02340 - 450787..451095 (-) 309 WP_010951048.1 AzlD family protein -
  G4V55_RS02345 - 451092..451799 (-) 708 Protein_461 AzlC family ABC transporter permease -
  G4V55_RS02350 dut 451965..452417 (+) 453 WP_103195211.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24613.96 Da        Isoelectric Point: 8.6140

>NTDB_id=423803 G4V55_RS02315 WP_047918678.1 447364..448029(+) (pilH) [Neisseria gonorrhoeae strain SRRSH240]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQIANLLRFSRGEAVRLNLPVYICPAQVKKDGTVD
NQCDFGKKEQGMLAFGDKNDNKAYDGDAADVFLRNVVLNDDIKDKRINYTFNHIAFGSSQPTADRVVWTFNQNGTFGYTK
DQHLASTSSFFYSDGYIQIVLTDARAVSDADRKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=423803 G4V55_RS02315 WP_047918678.1 447364..448029(+) (pilH) [Neisseria gonorrhoeae strain SRRSH240]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTACGGTCGAC
AACCAATGCGACTTCGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCTGCGGATGTTTTTCTCCGTAACGTGGTATTGAATGATGATATCAAGGATAAGCGGATTAATTACACCTTCAATCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTGCAAGCACATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

86.878

100

0.869