Detailed information NTG0423769

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: IHE41_RS07580
• Genome accession: NZ_CP062153
• Coordinates: 1633234..1634523 (-)
• Length: 429 a.a.
• NCBI ID: WP_021447448.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 17-VB00214
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1628234..1639523

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IHE41_RS07555 (IHE41_07530)	bioA	1628714..1629994 (+)	1281	WP_025508533.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-
IHE41_RS07560 (IHE41_07535)	-	1630064..1630330 (-)	267	WP_015296513.1	DksA/TraR family C4-type zinc finger protein	-
IHE41_RS07565 (IHE41_07540)	-	1630465..1630905 (-)	441	WP_025637115.1	hypothetical protein	-
IHE41_RS07570 (IHE41_07545)	-	1630899..1631465 (-)	567	WP_226056634.1	ATPase	-
IHE41_RS07575 (IHE41_07550)	serS	1631835..1633142 (-)	1308	WP_264401316.1	serine--tRNA ligase	-
IHE41_RS07580 (IHE41_07555)	rarA	1633234..1634523 (-)	1290	WP_021447448.1	replication-associated recombination protein A	Machinery gene
IHE41_RS07585 (IHE41_07560)	lolA	1634590..1635216 (-)	627	WP_025499169.1	outer membrane lipoprotein chaperone LolA	-
IHE41_RS07590 (IHE41_07565)	-	1635291..1638377 (-)	3087	WP_264401317.1	DNA translocase FtsK	-
IHE41_RS07595 (IHE41_07570)	lrp	1638530..1639024 (-)	495	WP_005378234.1	leucine-responsive transcriptional regulator Lrp	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47564.76 Da
• Isoelectric Point: 5.8532

>NTDB_id=423769 IHE41_RS07580 WP_021447448.1 1633234..1634523(-) (rarA) [Vibrio parahaemolyticus strain 17-VB00214]
MRPQTIEQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGDTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSQQKRYEK

Nucleotide

• Length: 1290 bp

>NTDB_id=423769 IHE41_RS07580 WP_021447448.1 1633234..1634523(-) (rarA) [Vibrio parahaemolyticus strain 17-VB00214]
ATGAGACCGCAAACTATTGAGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCTGGCCATGTCCACTCAATGATCCTTTGGGGGCCTCCTGGTACAGGTAAAACCACGTTAGCGGAAGTCGCTGCTAATT
ACGCCAATGCGGAAGTTGAACGTGTGTCTGCGGTGACGTCCGGTGTGAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTCCATCGCTTCAACAAATCGCAACAAGATGCGTT
CTTACCACATATTGAAGATGGAACCGTAACGTTTATTGGCGCAACGACAGAGAACCCATCTTTCGAACTGAATAACGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCGATTAAC
GACAAAGAACGAGGCCTGGGCGATACGCCAGCGAACTTTGCTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
CGATGCTCGCATGTCGCTTAACTACCTTGAACTTCTCTACGATATGGCAGAGGACAATGCGCAGGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCCGGGGAGAAAGTCTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCTGCTGTGCACAAATCTATTCGTGGATCAAACCCAGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGATCCACTTTACATTGCCCGTCGATTACTTGCGATAGCATCGGAAGATGTCGGCAATGCGGACCCTAGAGCCATGCAAG
TTGCACTCTCCGCGTGGGACTGTTTTACACGCGTTGGTCCAGCAGAAGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGACGCACATAACTTGCCTGAATA
TGAAGTGCCGCATCACTTGCGTAATGCACCCACCAGTCTGATGAAAGACATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCAGCGGGTGAGCAATATTTGCCACCAGAAATGGCAGATCGTAAGTACTATCAGCCGACA
AATCGCGGTCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCCAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (34-139)

• MgsA AAA+ ATPase C terminal (MgsA_C) (249-415)

• AAA C-terminal domain (AAA_assoc_2) (170-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.474	97.436	0.385