Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   HPB14_RS05485 Genome accession   NC_017733
Coordinates   1149643..1150416 (+) Length   257 a.a.
NCBI ID   WP_000404470.1    Uniprot ID   -
Organism   Helicobacter pylori HUP-B14     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1144643..1155416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPB14_RS05480 (HPB14_05470) hopL 1145965..1149630 (+) 3666 WP_000591311.1 Hop family outer membrane protein HopL -
  HPB14_RS05485 (HPB14_05475) proC 1149643..1150416 (+) 774 WP_000404470.1 pyrroline-5-carboxylate reductase Machinery gene
  HPB14_RS05490 fic 1150443..1150969 (+) 527 Protein_1056 protein adenylyltransferase Fic -
  HPB14_RS05495 (HPB14_05490) ybeY 1151215..1151637 (-) 423 WP_000889567.1 rRNA maturation RNase YbeY -
  HPB14_RS05500 (HPB14_05495) - 1151691..1152185 (-) 495 WP_000516075.1 flavodoxin -
  HPB14_RS05505 (HPB14_05500) - 1152276..1152857 (-) 582 WP_001154572.1 DedA family protein -
  HPB14_RS05510 (HPB14_05505) ccoS 1152980..1153171 (+) 192 WP_001090957.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  HPB14_RS05515 (HPB14_05510) - 1153195..1154169 (+) 975 WP_001071031.1 NAD(P)-binding domain-containing protein -
  HPB14_RS05520 (HPB14_05515) - 1154176..1155336 (-) 1161 WP_000944749.1 HP1165 family MFS efflux transporter -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28179.59 Da        Isoelectric Point: 6.1312

>NTDB_id=42373 HPB14_RS05485 WP_000404470.1 1149643..1150416(+) (proC) [Helicobacter pylori HUP-B14]
MEILQFIGYGNMAQAILEGAHETLSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAQSVLSALAGVNFEALSDAIDSLHYLKCMPNIASKFALSSTAVCEKSVAPSISEKALSIIESFGNCVRVGNEEQVD
SSVATNGSALAFLSLVASSLKDAGIREGLNARDSLELVEMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIEACHESVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=42373 HPB14_RS05485 WP_000404470.1 1149643..1150416(+) (proC) [Helicobacter pylori HUP-B14]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCGCTCATGAAACTTTATCCAAGCG
TTTTATTTTAGAAATCACCGGAAGAAACCCTGAAAAAATCGCCCCCTTTTTACAAGAAAAAAACATTCAAGCTCAAATCG
TGCCTTACAAAGACGCTATTGATATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCCCAAAGCGTTTTGAGTGCGTTAGCCGGGGTAAATTTTGAAGCTTTAAGCGATGCGATAGATTCTTT
ACATTACTTAAAATGCATGCCCAACATTGCGAGCAAGTTCGCCCTTTCTTCTACGGCGGTGTGTGAAAAATCGGTTGCGC
CTTCAATAAGCGAGAAAGCTTTGAGTATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGTAATGAAGAGCAGGTGGAT
TCTAGCGTGGCGACAAACGGGAGCGCGCTCGCGTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGACGCCGGTATTAGAGA
GGGTTTGAACGCTAGAGATTCTTTAGAATTGGTGGAAATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CAGAAATGATTATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAAGGGGTT
AGGGGAGCGTTTATAGAAGCTTGCCATGAAAGCGTGAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.402

98.833

0.37

Multiple sequence alignment