Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | G4Y78_RS08440 | Genome accession | NZ_CP048878 |
| Coordinates | 1771779..1772996 (-) | Length | 405 a.a. |
| NCBI ID | WP_163832604.1 | Uniprot ID | - |
| Organism | Spartinivicinus ruber strain S2-4-1H | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1766779..1777996
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G4Y78_RS08415 | argJ | 1767791..1769005 (+) | 1215 | WP_163832600.1 | bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ | - |
| G4Y78_RS08420 | - | 1769023..1769988 (+) | 966 | WP_163832601.1 | Nudix family hydrolase | - |
| G4Y78_RS08425 | yacG | 1770018..1770224 (-) | 207 | WP_222937666.1 | DNA gyrase inhibitor YacG | - |
| G4Y78_RS08430 | coaE | 1770217..1770822 (-) | 606 | WP_163832602.1 | dephospho-CoA kinase | - |
| G4Y78_RS08435 | pilD | 1770812..1771693 (-) | 882 | WP_163832603.1 | A24 family peptidase | Machinery gene |
| G4Y78_RS08440 | pilC | 1771779..1772996 (-) | 1218 | WP_163832604.1 | type II secretion system F family protein | Machinery gene |
| G4Y78_RS08445 | pilB | 1773242..1774936 (-) | 1695 | WP_163832605.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| G4Y78_RS31520 | pilA2 | 1775206..1775709 (+) | 504 | WP_329604954.1 | pilin | Machinery gene |
| G4Y78_RS08455 | - | 1776602..1776978 (-) | 377 | Protein_1674 | integrase core domain-containing protein | - |
| G4Y78_RS08460 | - | 1777160..1777392 (-) | 233 | Protein_1675 | transposase | - |
Sequence
Protein
Download Length: 405 a.a. Molecular weight: 43770.26 Da Isoelectric Point: 9.2438
>NTDB_id=423707 G4Y78_RS08440 WP_163832604.1 1771779..1772996(-) (pilC) [Spartinivicinus ruber strain S2-4-1H]
MATKAVKPSAFAWEGKDKKGRKTKGEIQGASIAMVKAELRKQGINPTKVKKKAISLGGKGKKIKPMDIAVFTRQLATMMK
AGVPLIQSFEITADGCENSNMRDLVNDVKNDVAGGSSLAEALRKRPKYFDDLYCSLVASGEQSGALENLLDRIATYKEKT
ESLKAKIKKAMTYPIAVVVVAVVVTAILLIKVVPQFQEVFSGFGADLPAFTMFVIEISEFLQAYWLYFLIGIGVIIFASS
KALEKSKGLRDGRDRFVLKVPIVGDIIDKSAVARYARTLSTTFAAGVPLVDALDSVAGAAGNIVYYDAARQIKEDISSGQ
QLQFAMKNTGVFPNLAVQMVGIGEESGALDEMLDKVASHYEEEVDNMVDNLTSLMEPMIMSVLGVLVGGLIVAMYLPIFQ
LGSVV
MATKAVKPSAFAWEGKDKKGRKTKGEIQGASIAMVKAELRKQGINPTKVKKKAISLGGKGKKIKPMDIAVFTRQLATMMK
AGVPLIQSFEITADGCENSNMRDLVNDVKNDVAGGSSLAEALRKRPKYFDDLYCSLVASGEQSGALENLLDRIATYKEKT
ESLKAKIKKAMTYPIAVVVVAVVVTAILLIKVVPQFQEVFSGFGADLPAFTMFVIEISEFLQAYWLYFLIGIGVIIFASS
KALEKSKGLRDGRDRFVLKVPIVGDIIDKSAVARYARTLSTTFAAGVPLVDALDSVAGAAGNIVYYDAARQIKEDISSGQ
QLQFAMKNTGVFPNLAVQMVGIGEESGALDEMLDKVASHYEEEVDNMVDNLTSLMEPMIMSVLGVLVGGLIVAMYLPIFQ
LGSVV
Nucleotide
Download Length: 1218 bp
>NTDB_id=423707 G4Y78_RS08440 WP_163832604.1 1771779..1772996(-) (pilC) [Spartinivicinus ruber strain S2-4-1H]
ATGGCTACAAAAGCAGTTAAACCCAGCGCTTTCGCCTGGGAAGGTAAAGACAAAAAAGGTCGTAAAACCAAAGGGGAGAT
CCAAGGCGCCAGTATTGCCATGGTCAAGGCAGAGCTGCGTAAGCAGGGGATCAATCCAACCAAGGTTAAGAAAAAAGCCA
TTAGCCTTGGCGGTAAAGGTAAAAAGATCAAGCCGATGGATATTGCTGTCTTTACCCGTCAGCTTGCCACCATGATGAAA
GCAGGTGTACCGCTAATTCAGTCGTTTGAGATTACCGCCGATGGCTGTGAAAATAGCAATATGCGAGACTTGGTTAACGA
TGTTAAAAATGACGTCGCTGGGGGTAGTAGCTTGGCTGAAGCCTTAAGAAAACGTCCTAAATATTTTGATGATTTATATT
GCAGCCTAGTGGCATCTGGTGAGCAATCAGGCGCACTGGAAAACTTACTAGATAGAATTGCTACTTATAAAGAAAAAACG
GAATCACTAAAAGCCAAAATCAAAAAAGCCATGACCTATCCAATTGCTGTAGTCGTTGTGGCAGTAGTTGTGACAGCTAT
TCTATTGATCAAAGTAGTACCTCAATTCCAGGAAGTTTTCTCAGGTTTTGGCGCTGACTTACCAGCCTTTACTATGTTTG
TAATTGAGATTTCTGAATTCTTACAAGCCTACTGGCTCTACTTTTTAATTGGTATTGGTGTAATTATTTTTGCTTCTAGC
AAAGCACTAGAGAAATCTAAAGGACTACGTGATGGTAGAGACCGGTTTGTGCTAAAAGTTCCGATTGTTGGTGATATTAT
TGATAAATCGGCTGTTGCCCGTTATGCCAGAACCCTCTCTACAACCTTTGCGGCAGGTGTGCCTTTAGTGGATGCCCTTG
ACTCTGTAGCAGGTGCTGCAGGTAATATAGTTTATTATGATGCAGCTAGGCAGATTAAAGAAGATATCTCTTCTGGCCAA
CAATTACAGTTTGCCATGAAAAACACTGGAGTATTCCCTAACTTAGCAGTCCAAATGGTAGGAATTGGCGAAGAATCTGG
TGCCCTTGATGAGATGCTAGACAAAGTGGCAAGTCATTATGAAGAGGAGGTGGATAATATGGTTGATAATCTCACCAGTT
TAATGGAGCCAATGATTATGTCTGTATTAGGCGTTTTGGTAGGTGGCCTTATTGTGGCTATGTACTTACCTATTTTCCAA
TTGGGTTCTGTTGTTTAA
ATGGCTACAAAAGCAGTTAAACCCAGCGCTTTCGCCTGGGAAGGTAAAGACAAAAAAGGTCGTAAAACCAAAGGGGAGAT
CCAAGGCGCCAGTATTGCCATGGTCAAGGCAGAGCTGCGTAAGCAGGGGATCAATCCAACCAAGGTTAAGAAAAAAGCCA
TTAGCCTTGGCGGTAAAGGTAAAAAGATCAAGCCGATGGATATTGCTGTCTTTACCCGTCAGCTTGCCACCATGATGAAA
GCAGGTGTACCGCTAATTCAGTCGTTTGAGATTACCGCCGATGGCTGTGAAAATAGCAATATGCGAGACTTGGTTAACGA
TGTTAAAAATGACGTCGCTGGGGGTAGTAGCTTGGCTGAAGCCTTAAGAAAACGTCCTAAATATTTTGATGATTTATATT
GCAGCCTAGTGGCATCTGGTGAGCAATCAGGCGCACTGGAAAACTTACTAGATAGAATTGCTACTTATAAAGAAAAAACG
GAATCACTAAAAGCCAAAATCAAAAAAGCCATGACCTATCCAATTGCTGTAGTCGTTGTGGCAGTAGTTGTGACAGCTAT
TCTATTGATCAAAGTAGTACCTCAATTCCAGGAAGTTTTCTCAGGTTTTGGCGCTGACTTACCAGCCTTTACTATGTTTG
TAATTGAGATTTCTGAATTCTTACAAGCCTACTGGCTCTACTTTTTAATTGGTATTGGTGTAATTATTTTTGCTTCTAGC
AAAGCACTAGAGAAATCTAAAGGACTACGTGATGGTAGAGACCGGTTTGTGCTAAAAGTTCCGATTGTTGGTGATATTAT
TGATAAATCGGCTGTTGCCCGTTATGCCAGAACCCTCTCTACAACCTTTGCGGCAGGTGTGCCTTTAGTGGATGCCCTTG
ACTCTGTAGCAGGTGCTGCAGGTAATATAGTTTATTATGATGCAGCTAGGCAGATTAAAGAAGATATCTCTTCTGGCCAA
CAATTACAGTTTGCCATGAAAAACACTGGAGTATTCCCTAACTTAGCAGTCCAAATGGTAGGAATTGGCGAAGAATCTGG
TGCCCTTGATGAGATGCTAGACAAAGTGGCAAGTCATTATGAAGAGGAGGTGGATAATATGGTTGATAATCTCACCAGTT
TAATGGAGCCAATGATTATGTCTGTATTAGGCGTTTTGGTAGGTGGCCTTATTGTGGCTATGTACTTACCTATTTTCCAA
TTGGGTTCTGTTGTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
70.123 |
100 |
0.701 |
| pilC | Acinetobacter baumannii D1279779 |
59.901 |
99.753 |
0.598 |
| pilC | Acinetobacter baylyi ADP1 |
60.957 |
98.025 |
0.598 |
| pilC | Legionella pneumophila strain ERS1305867 |
56.313 |
97.778 |
0.551 |
| pilG | Neisseria gonorrhoeae MS11 |
45.025 |
99.259 |
0.447 |
| pilG | Neisseria meningitidis 44/76-A |
45.025 |
99.259 |
0.447 |
| pilC | Vibrio campbellii strain DS40M4 |
42.157 |
100 |
0.425 |
| pilC | Vibrio cholerae strain A1552 |
41.728 |
100 |
0.417 |
| pilC | Thermus thermophilus HB27 |
38.25 |
98.765 |
0.378 |