Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   G4P54_RS14035 Genome accession   NZ_CP048852
Coordinates   2621508..2623904 (-) Length   798 a.a.
NCBI ID   WP_167872979.1    Uniprot ID   A0A6H0WL16
Organism   Bacillus tequilensis strain EA-CB0015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2616508..2628904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4P54_RS14015 (G4P54_13970) - 2619434..2620495 (-) 1062 WP_167872977.1 AI-2E family transporter -
  G4P54_RS14020 (G4P54_13975) - 2620593..2620724 (-) 132 WP_003225895.1 YrzQ family protein -
  G4P54_RS14025 (G4P54_13980) - 2620746..2620937 (-) 192 WP_003225893.1 hypothetical protein -
  G4P54_RS14030 (G4P54_13985) - 2620949..2621473 (-) 525 WP_167872978.1 PRC-barrel domain-containing protein -
  G4P54_RS14035 (G4P54_13990) recD2 2621508..2623904 (-) 2397 WP_167872979.1 ATP-dependent RecD-like DNA helicase Machinery gene
  G4P54_RS14040 (G4P54_13995) - 2623929..2624549 (-) 621 WP_217448317.1 tetratricopeptide repeat protein -
  G4P54_RS14045 (G4P54_14000) mnmA 2624635..2625750 (-) 1116 WP_167872981.1 tRNA 2-thiouridine(34) synthase MnmA -
  G4P54_RS14050 (G4P54_14005) - 2625778..2626920 (-) 1143 WP_167872982.1 cysteine desulfurase family protein -
  G4P54_RS14055 (G4P54_14010) cymR 2626939..2627355 (-) 417 WP_003225879.1 cysteine metabolism transcriptional regulator CymR -
  G4P54_RS14060 (G4P54_14015) - 2627558..2628823 (+) 1266 WP_167872983.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89196.83 Da        Isoelectric Point: 4.9553

>NTDB_id=423579 G4P54_RS14035 WP_167872979.1 2621508..2623904(-) (recD2) [Bacillus tequilensis strain EA-CB0015]
MQQHPDQLHMEEEPYLKGTVNTVIYHNDTNLYTVLKVKVIETSEAIEDKAVSVTGYFPALQEEETYTFYGKIVTHPKFGL
QFQAEHFKKEIPTTKEGIIQYLSSDLFEGIGKKTAEEIVKKLGDSAINKILADASVLYDVPKLSKKKADTLAGALQRHQG
LEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVKDVEGIGFGKADELGGRMGLSGNHPERIKAAILYTLETT
CLSEGHTYIETEKLIIDTQSLLNQSAREGERITEMDAANAIIALGENKDIVIEDGRCYFPSLFYAEQNVAKRVKHIASQT
EYDDQFPESEFLLALGELEERMNVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSAYKKD
EAFPIVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHTEDQPIEGKLLIIDEASMLDIWLANHLFKAIPDHIQI
IIVGDEDQLPSVGPGQVLRDLLASQVIPTVRLTDIYRQAEGSSIVELAHQMKEGLLPNNLTAPTKDRSFIRCGGSQIKEV
VEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPKEKPREIKFGDVVYRTGDKILQLVNQPENNVFNGD
IGEITSIFYAKENTEKEDMAVVSFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAIT
RAKKFLILCGEEEALEWGVKNNDATVRQTSLRNRLYAQIEEMDAELEALQKELPFSVHDANIGMEGITPFDFMKEEQL

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=423579 G4P54_RS14035 WP_167872979.1 2621508..2623904(-) (recD2) [Bacillus tequilensis strain EA-CB0015]
GTGCAGCAGCATCCGGATCAGCTTCATATGGAGGAAGAGCCCTATTTAAAAGGGACAGTCAACACAGTCATTTATCATAA
TGACACCAATTTATATACGGTTCTGAAAGTGAAAGTCATAGAAACCTCCGAGGCCATTGAAGATAAAGCCGTATCCGTGA
CGGGCTACTTCCCTGCGCTTCAAGAAGAGGAGACGTACACGTTTTACGGAAAGATCGTAACCCATCCGAAGTTCGGGCTC
CAATTTCAAGCGGAGCATTTCAAAAAAGAAATACCGACGACTAAGGAAGGCATTATTCAGTATTTATCGAGTGATTTGTT
CGAGGGAATCGGCAAAAAAACAGCCGAAGAAATTGTGAAAAAGCTGGGCGACAGCGCGATTAATAAAATTTTAGCCGATG
CTTCAGTGCTTTATGATGTTCCGAAGCTCTCAAAAAAGAAAGCAGATACGTTAGCCGGCGCCTTGCAGCGGCATCAGGGA
CTTGAGCAAATCATGATTTCCTTGAATCAGTTTGGCTTCGGCCCGCAGCTGTCTATGAAAATCTATCAGGCCTATGAATC
CGAAACGCTTGAAAAGATTCAGGAAAACCCATATCAGCTTGTGAAGGATGTAGAAGGCATTGGATTTGGGAAAGCGGATG
AGCTTGGCGGCAGAATGGGACTTTCCGGGAATCATCCAGAGCGGATAAAAGCCGCCATTTTGTACACGCTTGAAACGACT
TGTTTGTCTGAAGGACATACGTACATAGAAACGGAAAAGCTGATTATCGACACCCAATCATTGTTAAACCAGTCAGCAAG
GGAAGGAGAGCGCATCACAGAAATGGATGCCGCTAACGCAATAATTGCCCTTGGAGAAAATAAAGACATTGTCATAGAGG
ATGGCCGCTGTTATTTTCCATCGCTGTTTTACGCGGAACAAAACGTTGCAAAGCGTGTGAAACATATCGCAAGCCAAACC
GAATATGACGACCAGTTTCCGGAATCGGAATTTCTGCTCGCTTTGGGAGAACTGGAAGAACGGATGAATGTTCAGTATGC
CCCGAGCCAGAAGGAAGCGATTCAAAAAGCTCTTTCTTCACCGATGCTTCTTTTAACGGGAGGCCCAGGAACAGGAAAAA
CGACGGTCATCAGAGGGATTGTTGAACTGTACGGAGAACTTCACGGTGTGTCTCTGGACCCGTCAGCTTATAAAAAGGAT
GAAGCTTTCCCGATTGTATTGGCCGCACCGACAGGAAGAGCGGCGAAACGGATGAGTGAATCAACCGGTCTCCCGGCAGT
CACGATTCACAGGCTGCTTGGCTGGAACGGCGCTGAGGGCTTCACCCATACAGAGGACCAGCCGATCGAAGGGAAGCTGT
TAATTATCGATGAAGCCAGCATGCTTGATATATGGCTGGCGAACCATTTGTTTAAAGCGATCCCTGATCATATTCAAATT
ATCATAGTCGGAGACGAAGACCAGCTGCCTTCTGTCGGTCCGGGCCAAGTGCTGAGAGACCTTTTGGCATCACAGGTGAT
CCCGACTGTGAGACTGACAGATATCTACCGCCAGGCGGAGGGATCATCAATTGTTGAGCTTGCCCACCAGATGAAAGAAG
GATTGCTGCCCAACAATTTGACTGCACCGACGAAAGACCGTTCCTTTATTCGCTGCGGAGGCTCGCAAATAAAAGAGGTC
GTTGAGAAGGTTGTCGCCAATGCATTAAAAAAAGGCTATACGGCAAAGGACATTCAGGTTCTCGCTCCCATGTACAGAGG
GAAAGCCGGCATCAATGAACTGAATGTGATGCTGCAGGACATATTAAATCCGCCTAAAGAAAAACCGAGAGAAATCAAGT
TCGGGGATGTAGTCTACAGAACCGGTGATAAAATTCTGCAGCTTGTCAATCAGCCGGAAAACAATGTATTCAACGGAGAT
ATTGGTGAAATCACCTCGATATTTTATGCGAAGGAAAATACAGAAAAAGAAGATATGGCCGTCGTTTCTTTTGACGGCAA
TGAAATGACGTTTACGAAAAAAGATTTTAACCAGTTCACCCACGCATATTGCTGCTCTATTCATAAATCGCAGGGAAGTG
AATTTCCGATTGTGGTTTTGCCTGTTGTGAAGGGCTACTATAGAATGCTCAGAAGAAACCTTCTTTATACCGCCATTACA
AGAGCGAAGAAATTTCTCATTTTATGCGGAGAAGAGGAGGCGTTGGAGTGGGGCGTGAAAAATAATGACGCGACTGTCAG
ACAGACTTCCCTGAGAAACAGGCTTTATGCACAGATTGAGGAAATGGATGCCGAGCTCGAGGCTTTGCAAAAAGAGCTTC
CGTTCAGCGTGCACGACGCCAATATAGGAATGGAAGGCATCACGCCATTTGATTTTATGAAAGAAGAACAGCTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)

AAA domain (AAA_30)

(346-553)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H0WL16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

97.742

99.875

0.976