Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   G4P54_RS08465 Genome accession   NZ_CP048852
Coordinates   1597799..1598578 (+) Length   259 a.a.
NCBI ID   WP_024716060.1    Uniprot ID   A0A6H0WI07
Organism   Bacillus tequilensis strain EA-CB0015     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1592799..1603578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4P54_RS08445 (G4P54_08420) trmFO 1593493..1594800 (+) 1308 WP_167872354.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  G4P54_RS08450 (G4P54_08425) xerC 1594867..1595781 (+) 915 WP_024716063.1 tyrosine recombinase XerC -
  G4P54_RS08455 (G4P54_08430) clpQ 1595794..1596339 (+) 546 WP_064813768.1 ATP-dependent protease subunit ClpQ -
  G4P54_RS08460 (G4P54_08435) hslU 1596347..1597759 (+) 1413 WP_277348621.1 HslU--HslV peptidase ATPase subunit -
  G4P54_RS08465 (G4P54_08440) codY 1597799..1598578 (+) 780 WP_024716060.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  G4P54_RS08470 (G4P54_08445) flgB 1598936..1599325 (+) 390 WP_167872356.1 flagellar basal body rod protein FlgB -
  G4P54_RS08475 (G4P54_08450) flgC 1599325..1599777 (+) 453 WP_024716058.1 flagellar basal body rod protein FlgC -
  G4P54_RS08480 (G4P54_08455) fliE 1599789..1600109 (+) 321 WP_024716057.1 flagellar hook-basal body complex protein FliE -
  G4P54_RS08485 (G4P54_08460) fliF 1600155..1601765 (+) 1611 WP_167872357.1 flagellar basal-body MS-ring/collar protein FliF -
  G4P54_RS08490 (G4P54_08465) fliG 1601778..1602794 (+) 1017 WP_024716055.1 flagellar motor switch protein FliG -
  G4P54_RS08495 (G4P54_08470) fliH 1602787..1603539 (+) 753 WP_167872358.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29027.25 Da        Isoelectric Point: 4.6560

>NTDB_id=423558 G4P54_RS08465 WP_024716060.1 1597799..1598578(+) (codY) [Bacillus tequilensis strain EA-CB0015]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENERMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=423558 G4P54_RS08465 WP_024716060.1 1597799..1598578(+) (codY) [Bacillus tequilensis strain EA-CB0015]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCGATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGTTGCGGGATGTCATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGCAAACTCCTTGGATATTCTATTA
ATCAGCAGATTGAAAACGAGCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCAGAAGAATATACGAAAAACCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGACATTAATAGTGAATATACTGCTTTTCCTGTTGAAAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTACCGATCATCGGAGGCGGAGAAAGATTAGGCACACTCATTCTTTCACGTTTACAGGATC
AATTTAATGACGATGACCTAATTCTTGCTGAATACGGTGCTACAGTTGTCGGAATGGAAATTCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTTCAAATGGCTATCAGTTCTCTTTCTTACAGTGAGCTTGAGGCAAT
TGAGCACATTTTTGAAGAGCTTGACGGAAACGAAGGGCTTCTAGTAGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTTAACGCACTCAGAAAGCTGGAAAGCGCGGGTGTCATCGAATCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTCTTAAATAACAAATTCCTAATTGAATTAGAAAATCTGAAATCCCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H0WI07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.059

98.456

0.463