Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   IE382_RS07760 Genome accession   NZ_CP061870
Coordinates   1498203..1499120 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain FX-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1493203..1504120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS07745 (IE382_07710) trpS 1493783..1494775 (-) 993 WP_041336661.1 tryptophan--tRNA ligase -
  IE382_RS07750 (IE382_07715) oppA 1495519..1497156 (+) 1638 WP_003232957.1 oligopeptide ABC transporter substrate-binding protein OppA -
  IE382_RS07755 (IE382_07720) oppB 1497264..1498199 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  IE382_RS07760 (IE382_07725) amiD 1498203..1499120 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  IE382_RS07765 (IE382_07730) oppD 1499125..1500201 (+) 1077 WP_080333450.1 oligopeptide ABC transporter ATP-binding protein OppD -
  IE382_RS07770 (IE382_07735) oppF 1500203..1501120 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  IE382_RS07775 (IE382_07740) yjbB 1501227..1502444 (+) 1218 WP_080316915.1 MFS transporter -
  IE382_RS07780 (IE382_07745) yjbC 1502609..1503187 (+) 579 WP_144459369.1 GNAT family N-acetyltransferase -
  IE382_RS07785 (IE382_07750) spx 1503368..1503763 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=423471 IE382_RS07760 WP_003232954.1 1498203..1499120(+) (amiD) [Bacillus subtilis strain FX-1]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=423471 IE382_RS07760 WP_003232954.1 1498203..1499120(+) (amiD) [Bacillus subtilis strain FX-1]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTCGCAGCCGCTGTTCTTGATTTGCTGATCGGTGTTATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAAGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364