Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LSA_RS03640 Genome accession   NC_015978
Coordinates   723435..724028 (-) Length   197 a.a.
NCBI ID   WP_238331741.1    Uniprot ID   -
Organism   Fructilactobacillus sanfranciscensis TMW 1.1304     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 718435..729028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSA_RS03620 (LSA_07400) plsY 718599..719228 (+) 630 WP_041817764.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  LSA_RS03625 (LSA_07410) - 719263..720147 (-) 885 WP_049777605.1 aldose 1-epimerase family protein -
  LSA_RS03630 (LSA_07420) xerC 720238..721170 (-) 933 WP_014082014.1 tyrosine recombinase XerC -
  LSA_RS03635 (LSA_07430) topA 721223..723346 (-) 2124 WP_041817766.1 type I DNA topoisomerase -
  LSA_RS03640 (LSA_07440) dprA 723435..724028 (-) 594 WP_238331741.1 DNA-processing protein DprA Machinery gene
  LSA_RS03645 (LSA_07450) - 724034..724309 (-) 276 WP_014082016.1 hypothetical protein -
  LSA_RS03650 (LSA_07460) - 724351..725115 (-) 765 WP_014082017.1 ribonuclease HII -
  LSA_RS03655 (LSA_07470) ylqF 725118..725981 (-) 864 WP_014082018.1 ribosome biogenesis GTPase YlqF -
  LSA_RS03660 (LSA_07480) - 725992..726213 (-) 222 WP_014082019.1 YozE family protein -
  LSA_RS03665 (LSA_07490) - 726226..726717 (-) 492 WP_014082020.1 dihydrofolate reductase -
  LSA_RS03670 (LSA_07500) - 726730..727680 (-) 951 WP_014082021.1 thymidylate synthase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21374.77 Da        Isoelectric Point: 9.1005

>NTDB_id=42342 LSA_RS03640 WP_238331741.1 723435..724028(-) (dprA) [Fructilactobacillus sanfranciscensis TMW 1.1304]
MYLPPVILFYAGNLNLLNEKNLLGVVGSRKCSKYAVQAMKKIFSQNVISHYVIVSGLAEGVDTLGHQIALANRGKTIAVL
GTGLDCFYPRSNQGLQIELTKNNLVLSEYDSEIGPRKHHFVERNRIIAGLSQKLLVVEARLKSGSLITASLALQNNRDIL
AVPGNVNSSYSAGSNELIAAGCQPCLDERDVLGRIII

Nucleotide


Download         Length: 594 bp        

>NTDB_id=42342 LSA_RS03640 WP_238331741.1 723435..724028(-) (dprA) [Fructilactobacillus sanfranciscensis TMW 1.1304]
ATGTATTTGCCACCGGTGATATTATTTTATGCTGGTAATTTAAATTTATTAAACGAAAAAAATTTATTAGGTGTGGTAGG
TTCTCGAAAATGTTCTAAGTACGCAGTTCAGGCTATGAAAAAAATTTTTAGTCAGAATGTAATTAGTCATTATGTAATTG
TTTCTGGTTTGGCTGAAGGAGTGGATACGCTTGGACATCAGATTGCTTTAGCTAATAGGGGAAAAACAATTGCAGTTTTG
GGAACGGGATTAGATTGTTTTTATCCTCGAAGTAATCAAGGACTTCAAATTGAACTAACAAAAAATAATTTAGTTTTGAG
CGAATATGATTCTGAAATTGGTCCGCGCAAACATCATTTTGTTGAACGAAATCGTATTATTGCTGGACTTTCACAAAAAT
TATTAGTTGTCGAAGCAAGACTTAAATCTGGTTCGTTGATTACAGCAAGTTTAGCTTTACAAAATAATCGTGATATCCTT
GCAGTACCTGGTAATGTTAATAGCAGTTATTCGGCAGGTTCCAACGAATTAATTGCCGCAGGTTGTCAACCTTGTCTCGA
TGAAAGAGACGTCTTAGGACGCATTATCATTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(2-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

49.479

97.462

0.482
  dprA/cilB/dalA Streptococcus mitis SK321

48.205

98.985

0.477
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

47.692

98.985

0.472
  dprA/cilB/dalA Streptococcus pneumoniae D39

47.692

98.985

0.472
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

47.692

98.985

0.472
  dprA/cilB/dalA Streptococcus pneumoniae R6

47.692

98.985

0.472
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

47.692

98.985

0.472
  dprA Lactococcus lactis subsp. cremoris KW2

47.917

97.462

0.467
  dprA Latilactobacillus sakei subsp. sakei 23K

47.059

94.924

0.447
  dprA Legionella pneumophila strain ERS1305867

45.128

98.985

0.447
  dprA Neisseria meningitidis strain C311

43.316

94.924

0.411
  dprA Neisseria meningitidis MC58

43.316

94.924

0.411
  dprA Neisseria gonorrhoeae MS11

43.316

94.924

0.411
  dprA Neisseria gonorrhoeae strain FA1090

42.781

94.924

0.406
  dprA Vibrio campbellii strain DS40M4

41.451

97.97

0.406
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40

100

0.406
  dprA Glaesserella parasuis strain SC1401

41.237

98.477

0.406
  dprA Haemophilus influenzae Rd KW20

41.799

95.939

0.401
  dprA Thermus thermophilus HB27

39.683

95.939

0.381
  dprA Staphylococcus aureus N315

39.062

97.462

0.381
  dprA Staphylococcus aureus MW2

39.062

97.462

0.381
  dprA Bacillus subtilis subsp. subtilis str. 168

38.542

97.462

0.376
  dprA Vibrio cholerae strain A1552

40.11

92.386

0.371
  dprA Acinetobacter baumannii D1279779

40.223

90.863

0.365
  dprA Acinetobacter baumannii strain A118

40.223

90.863

0.365
  dprA Acinetobacter baylyi ADP1

39.665

90.863

0.36

Multiple sequence alignment