Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   G4C92_RS08090 Genome accession   NZ_CP048829
Coordinates   1724071..1725909 (-) Length   612 a.a.
NCBI ID   WP_274939360.1    Uniprot ID   -
Organism   Chordicoccus furentiruminis strain MP1D12     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1719071..1730909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4C92_RS08070 - 1719515..1720552 (+) 1038 WP_274939356.1 LacI family DNA-binding transcriptional regulator -
  G4C92_RS08075 - 1720539..1722026 (+) 1488 WP_274939357.1 sucrose-6-phosphate hydrolase -
  G4C92_RS08080 - 1722220..1722903 (-) 684 WP_274939358.1 Crp/Fnr family transcriptional regulator -
  G4C92_RS08085 - 1723096..1723848 (+) 753 WP_274939359.1 ATP-binding protein -
  G4C92_RS08090 rcrQ 1724071..1725909 (-) 1839 WP_274939360.1 ABC transporter ATP-binding protein Regulator
  G4C92_RS08095 - 1725902..1728070 (-) 2169 WP_274939361.1 ABC transporter ATP-binding protein -
  G4C92_RS08100 - 1728067..1728570 (-) 504 WP_274939362.1 MarR family winged helix-turn-helix transcriptional regulator -
  G4C92_RS08105 - 1728916..1729497 (+) 582 WP_274939363.1 hypothetical protein -
  G4C92_RS08110 - 1729528..1730787 (+) 1260 WP_274939364.1 ISAs1 family transposase -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 67866.28 Da        Isoelectric Point: 8.5461

>NTDB_id=423358 G4C92_RS08090 WP_274939360.1 1724071..1725909(-) (rcrQ) [Chordicoccus furentiruminis strain MP1D12]
MSESDRRPARRGPHGGMRPVEKPKDFKKAFSELTRYMSRYRLRLAVMLLCAVAGTVFTIIGPKILGRATTELFSGLMAKI
RGTGGIPFAKISRILLTSLILYAVSAAFSFLQGIVMTGISNDVGYNLRKDISVKINRIPLKYFESRPYGEVLSRITNDVD
TLQQGINQSITQLITSLTTIVGVLIMMLSINVWMTLAALVILPVSAGIVGFVMKRSQRYFRDQQRYLGDVNGQVEEVFAG
QNVIRAYNQESAVLGTFEASNDKLCESGWKSQFFSGLMMPVMQFIGNLGYVAVAILGGFLVIRNAIAVGDIQAFFQYIRS
FTQPINQIAQVLNQLQSSTAASERVFEFLAEEEEPQTAAHPVDPAGLAGNVEFRDVCFGYNKDQPVIHHFSAKIRDGQKI
AIVGPTGAGKTTVVKLLMRFYDVDSGAVLVDGHDVREFSRPDLRGMLGMVLQDTWLFNGTIMENIRYGRPDATDEEVIAA
AKAAHAHHFIMQQPDGYQTMLNEETTNISQGQKQLLTIARAILADSRILILDEATSSVDTRTEVRIQKAMDNLMKGRTSF
VIAHRLSTIRNADLILVMKDGDIIEQGTHSELLAQNGFYADLYRSQFEQISA

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=423358 G4C92_RS08090 WP_274939360.1 1724071..1725909(-) (rcrQ) [Chordicoccus furentiruminis strain MP1D12]
ATGAGTGAATCCGACAGACGTCCGGCGCGGCGAGGGCCGCACGGAGGCATGAGACCGGTTGAGAAGCCGAAGGATTTCAA
AAAGGCATTCAGCGAGCTGACGCGGTACATGAGCCGTTACCGGCTCCGTCTCGCCGTCATGCTGCTCTGCGCGGTCGCCG
GAACCGTCTTCACCATCATCGGCCCGAAGATCCTCGGTCGGGCGACGACCGAGCTGTTCAGCGGACTGATGGCCAAGATC
CGGGGCACCGGCGGTATTCCGTTCGCAAAAATCTCGCGGATCCTGCTGACATCACTGATCCTGTACGCGGTCAGCGCGGC
CTTCTCCTTTCTGCAGGGGATCGTGATGACCGGAATTTCCAATGATGTCGGCTACAATTTGAGGAAGGACATCTCTGTCA
AAATCAACCGGATCCCGCTGAAGTATTTCGAAAGCCGCCCCTACGGCGAGGTGCTCTCCCGGATCACAAACGACGTGGAT
ACGCTGCAGCAGGGCATCAACCAGAGTATCACCCAGCTGATCACCTCCCTCACGACGATCGTCGGAGTGCTGATCATGAT
GCTCTCCATCAACGTCTGGATGACACTGGCCGCGCTGGTGATCCTCCCCGTCTCCGCGGGAATCGTCGGGTTCGTGATGA
AACGGTCCCAGCGATACTTCCGGGATCAGCAGAGGTATCTCGGCGATGTCAACGGACAGGTCGAGGAAGTCTTCGCCGGC
CAGAATGTCATCCGGGCCTACAATCAGGAAAGCGCCGTCCTCGGAACGTTTGAAGCCTCCAACGACAAGCTCTGCGAAAG
CGGCTGGAAGTCTCAGTTCTTCTCAGGCCTGATGATGCCGGTCATGCAGTTCATCGGCAATCTCGGCTATGTCGCCGTGG
CGATTCTCGGCGGTTTTCTGGTGATCCGCAATGCCATTGCCGTCGGCGATATACAGGCATTTTTCCAGTACATCAGGAGC
TTTACGCAGCCGATCAATCAGATCGCCCAGGTGCTGAATCAGCTCCAGTCCTCCACTGCCGCGTCCGAGCGCGTCTTCGA
GTTTCTCGCCGAGGAAGAGGAGCCGCAGACCGCGGCCCATCCGGTCGATCCGGCCGGGCTTGCCGGCAACGTGGAATTCC
GTGACGTCTGCTTCGGATACAATAAGGATCAGCCGGTCATCCATCACTTCTCGGCAAAGATCCGGGACGGCCAGAAAATC
GCGATCGTCGGTCCTACCGGAGCCGGCAAGACAACGGTCGTCAAACTTCTGATGCGGTTCTACGATGTGGACAGCGGGGC
GGTCCTTGTGGACGGACATGATGTCCGCGAGTTCAGCCGTCCGGATCTGCGCGGCATGCTGGGGATGGTGCTTCAGGACA
CATGGCTGTTCAACGGCACCATTATGGAAAACATCCGGTACGGGCGGCCCGACGCCACCGACGAGGAGGTGATCGCCGCC
GCGAAAGCCGCGCACGCGCATCACTTCATCATGCAGCAGCCCGACGGCTATCAGACCATGCTGAACGAGGAAACCACCAA
TATCTCTCAGGGCCAGAAGCAGCTTCTGACTATCGCCCGGGCGATCCTGGCTGACAGCCGGATCCTGATCCTGGATGAAG
CCACCTCCTCCGTGGATACGAGAACAGAGGTGCGGATCCAGAAGGCGATGGACAATCTGATGAAGGGCCGTACCAGCTTT
GTGATCGCCCACCGGCTCTCCACGATCCGGAACGCGGATCTGATTCTCGTCATGAAGGACGGTGACATCATCGAGCAGGG
TACCCACAGCGAACTGCTCGCTCAGAACGGCTTCTACGCGGACCTCTACCGGAGCCAGTTCGAGCAGATCAGCGCCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(388-536)

ABC transporter transmembrane region (ABC_membrane)

(45-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.195

95.752

0.49

Multiple sequence alignment