Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BAINH2_RS04075 Genome accession   NZ_CP061852
Coordinates   840419..842236 (+) Length   605 a.a.
NCBI ID   WP_053573600.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain INH2-4b     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 835419..847236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAINH2_RS04065 (BAINH2_04065) - 836087..838411 (+) 2325 WP_053573599.1 peptidase G2 autoproteolytic cleavage domain-containing protein -
  BAINH2_RS04070 (BAINH2_04070) - 838705..840438 (+) 1734 WP_015239413.1 ABC transporter ATP-binding protein -
  BAINH2_RS04075 (BAINH2_04075) rcrQ 840419..842236 (+) 1818 WP_053573600.1 ABC transporter ATP-binding protein Regulator
  BAINH2_RS04080 (BAINH2_04080) - 842404..842808 (+) 405 WP_007408534.1 DoxX family protein -
  BAINH2_RS04085 (BAINH2_04085) - 842825..843682 (+) 858 WP_031378894.1 VOC family protein -
  BAINH2_RS04090 (BAINH2_04090) cyoE 844044..844991 (+) 948 WP_015417050.1 heme o synthase -
  BAINH2_RS04095 (BAINH2_04095) - 845029..845580 (-) 552 WP_012117104.1 PadR family transcriptional regulator -
  BAINH2_RS04100 (BAINH2_04100) - 845813..846415 (+) 603 WP_015417051.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 67553.31 Da        Isoelectric Point: 9.5380

>NTDB_id=423142 BAINH2_RS04075 WP_053573600.1 840419..842236(+) (rcrQ) [Bacillus amyloliquefaciens strain INH2-4b]
MQKDIRKPFRYPKIPLKSNEGGRKRAKAKDTKGTLRRIWSYVAEKKGLLTLVIIMVVISAIFGLLGPFVIGKAIDHFIVG
QTTDGLAGVLFILFGIYLVQSLSLWFQNYWMINISQSTVFKMRSELFTHLHELPIPFFDKQRLGDLMSRVTNDIENVSST
LNSSVIQVLSSVITFVGTIAVMLYMSPLLTLITLLIIPIMLLSIKWITNRTGLLFKQQQKNLGELNGFIEESISGAKVIK
AYSREDRVMEQFLEKNAALQSSGFWAQTISGFIPKVMNSLNNLSFTIIAAVGGLFALKGWISIGSIVVFAEYSRQFTRPL
NDLANQFNTMLSAIAGAERVFDVLDEKEEREDEEHALYQPIKTGEIEFRDVSFGYQEDSPILKHLSFSVPKGQSIAFVGP
TGAGKTTITSLIARFYEPNNGKILIDGTDIKKLTRSSLRKNMGFVLQDSFLFQGTIRENIRYGRLDASDKEVEEAAKAAN
AHGFIERLPKGYDTVLTQNGAGISQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVKIQEALGRLMAGRTSVIIAHR
LNTIQKADQILVLKDGEMAEKGTHAELLSQNGFYRELYESQFREL

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=423142 BAINH2_RS04075 WP_053573600.1 840419..842236(+) (rcrQ) [Bacillus amyloliquefaciens strain INH2-4b]
ATGCAAAAAGACATTCGTAAACCTTTCCGATATCCGAAAATACCGCTCAAATCAAATGAAGGCGGCAGAAAACGCGCGAA
AGCAAAAGATACAAAAGGCACGCTGCGCAGAATCTGGTCTTATGTAGCCGAGAAAAAAGGGCTTTTAACCCTTGTGATCA
TCATGGTAGTCATAAGCGCCATATTCGGCCTGCTCGGACCGTTCGTCATCGGGAAAGCGATTGATCATTTTATCGTCGGC
CAGACGACAGACGGATTGGCGGGGGTGCTGTTCATCCTGTTTGGGATTTACCTCGTGCAATCATTGTCCTTATGGTTTCA
AAACTATTGGATGATCAATATCTCGCAAAGCACCGTGTTTAAAATGCGGAGCGAGCTGTTTACCCATCTGCATGAGCTGC
CGATTCCGTTTTTTGATAAACAGCGGCTCGGGGACTTAATGAGCCGGGTCACCAATGATATCGAAAATGTCAGCTCCACT
TTAAATTCATCCGTCATTCAAGTGCTGTCGAGCGTCATTACATTCGTCGGCACAATCGCCGTCATGCTGTACATGAGTCC
GCTTTTAACATTGATCACGCTTTTGATTATTCCGATCATGCTTTTGAGCATTAAATGGATCACCAACCGGACGGGATTGC
TGTTTAAACAGCAGCAGAAAAACCTCGGCGAGCTGAACGGTTTTATTGAAGAGTCGATATCAGGGGCGAAGGTCATTAAA
GCCTATTCGAGGGAAGACCGCGTCATGGAACAATTTTTAGAAAAAAACGCGGCGTTACAATCATCGGGGTTTTGGGCGCA
GACGATTTCGGGATTCATTCCGAAAGTCATGAACTCTTTAAACAATTTAAGCTTTACGATTATAGCGGCGGTCGGCGGGC
TGTTTGCGCTGAAGGGGTGGATTTCAATCGGTTCCATCGTCGTATTCGCCGAATATTCGCGGCAGTTCACGCGCCCTTTA
AATGATTTAGCCAATCAGTTCAATACGATGTTATCGGCCATCGCCGGGGCTGAACGGGTGTTTGACGTGCTGGATGAAAA
AGAGGAGCGGGAAGATGAAGAGCATGCGCTGTACCAGCCGATCAAAACGGGAGAGATTGAATTCCGAGATGTCTCCTTCG
GCTATCAGGAAGACAGCCCGATCTTAAAACACCTGTCCTTCAGCGTTCCGAAAGGACAGTCCATCGCCTTCGTCGGACCG
ACCGGAGCGGGTAAAACAACCATTACGAGCCTGATCGCCCGTTTTTACGAGCCGAATAATGGAAAAATCCTCATTGACGG
AACGGACATCAAAAAACTGACGAGATCCAGTCTGAGAAAAAACATGGGGTTTGTCCTGCAGGATTCCTTTCTCTTTCAGG
GCACCATCAGGGAAAATATTCGCTACGGCCGTCTGGATGCTTCTGACAAAGAGGTGGAGGAAGCCGCAAAAGCCGCCAAT
GCCCACGGGTTCATCGAACGGCTCCCGAAAGGCTATGATACTGTTCTTACCCAAAACGGCGCGGGCATCAGCCAAGGACA
AAAACAGCTCATTTCCATCGCGAGAGCTGTGCTGGCAGACCCGGTGCTGCTCATTTTGGATGAAGCGACGAGCAACATTG
ACACAGTGACCGAAGTGAAAATACAAGAAGCGCTCGGCCGTTTAATGGCGGGCAGAACAAGCGTCATCATCGCTCACAGG
CTGAACACGATTCAAAAAGCGGATCAGATTCTTGTGCTGAAAGACGGCGAAATGGCTGAAAAAGGAACCCATGCCGAACT
TCTCAGCCAGAACGGGTTTTACCGGGAATTATATGAAAGCCAGTTCCGGGAATTATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(49-320)

ABC transporter (ABC_tran)

(382-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.593

96.364

0.372

Multiple sequence alignment