Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IE752_RS31935 Genome accession   NZ_CP061850
Coordinates   6854835..6855560 (-) Length   241 a.a.
NCBI ID   WP_031756987.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain R31     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6849835..6860560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE752_RS31910 (IE752_31910) - 6850307..6850822 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  IE752_RS31915 (IE752_31915) rarD 6851512..6852408 (-) 897 WP_003103301.1 EamA family transporter RarD -
  IE752_RS31920 (IE752_31920) - 6852611..6853585 (-) 975 WP_031756990.1 serine/threonine protein kinase -
  IE752_RS31925 (IE752_31925) - 6853647..6854405 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  IE752_RS31930 (IE752_31930) - 6854473..6854793 (-) 321 WP_003117926.1 YfiM family lipoprotein -
  IE752_RS31935 (IE752_31935) comF 6854835..6855560 (-) 726 WP_031756987.1 ComF family protein Machinery gene
  IE752_RS31940 (IE752_31940) - 6855699..6855992 (-) 294 WP_003113255.1 hypothetical protein -
  IE752_RS31945 (IE752_31945) - 6856046..6856972 (-) 927 WP_074231244.1 LysR family transcriptional regulator -
  IE752_RS31950 (IE752_31950) - 6857090..6857848 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  IE752_RS31955 (IE752_31955) - 6857925..6858173 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  IE752_RS31960 (IE752_31960) - 6858184..6859560 (+) 1377 WP_003103320.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  IE752_RS31965 (IE752_31965) - 6859562..6860440 (+) 879 WP_003103323.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27104.64 Da        Isoelectric Point: 11.2212

>NTDB_id=423114 IE752_RS31935 WP_031756987.1 6854835..6855560(-) (comF) [Pseudomonas aeruginosa strain R31]
MSFLLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=423114 IE752_RS31935 WP_031756987.1 6854835..6855560(-) (comF) [Pseudomonas aeruginosa strain R31]
ATGTCGTTCCTGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCACTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGACTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382

Multiple sequence alignment