Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   GOP56_RS22380 Genome accession   NZ_CP048799
Coordinates   5183446..5185710 (+) Length   754 a.a.
NCBI ID   WP_096887001.1    Uniprot ID   A0AAE6WQ91
Organism   Brevibacillus sp. 7WMA2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5178446..5190710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOP56_RS22360 (GOP56_22360) - 5178598..5179353 (+) 756 WP_003338330.1 ThiF family adenylyltransferase -
  GOP56_RS22365 (GOP56_22365) - 5179685..5181001 (+) 1317 WP_163246674.1 replication-associated recombination protein A -
  GOP56_RS23525 - 5181309..5181482 (-) 174 WP_003338327.1 hypothetical protein -
  GOP56_RS22370 (GOP56_22370) cymR 5181595..5182014 (+) 420 WP_003338326.1 cysteine metabolism transcriptional regulator CymR -
  GOP56_RS22375 (GOP56_22375) - 5182046..5183188 (+) 1143 WP_163246675.1 cysteine desulfurase family protein -
  GOP56_RS22380 (GOP56_22380) recD2 5183446..5185710 (+) 2265 WP_096887001.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GOP56_RS22385 (GOP56_22385) - 5185796..5186296 (+) 501 WP_003345359.1 PRC-barrel domain-containing protein -
  GOP56_RS22390 (GOP56_22390) - 5186317..5186514 (+) 198 WP_003345362.1 hypothetical protein -
  GOP56_RS23530 - 5186557..5186730 (+) 174 WP_162988319.1 hypothetical protein -
  GOP56_RS22395 (GOP56_22395) - 5186930..5188018 (+) 1089 WP_163246676.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 754 a.a.        Molecular weight: 85594.81 Da        Isoelectric Point: 5.7454

>NTDB_id=423105 GOP56_RS22380 WP_096887001.1 5183446..5185710(+) (recD2) [Brevibacillus sp. 7WMA2]
MQQQALPLFRETFIRGQVKHEIFYNEENWYAIIRFKVEETTEPIKDKEVIVVGHFPRPHEDETYTFYGEWKDHPKYGKQY
VAERYERETPKTKSGVEKYLASGLFSGIGKKLAKRIVEHLGVDALTIIAENPDDLAAIPGISPKRAKQIYESVLEHQSLE
RTMVFLYEFGIGVHLALRIYQAYKHNTMTVLTETPYKLIEDVQGIGFKRADEIALSTGIAASSQERVMAACLYVLQEAGY
SEGHVYFPHEELIARAISLLTECGGHVFEAEDVKGAIEQLVMDNKVHWEEERVYLPSLFFAEIGLAKRLHYFASRENPDS
YPASEFYQAIGKVEEELGISYASKQREAVEKAMDSGLMLLTGGPGTGKTTVIRGICHVFANLQGISLDMKKYDTQDNPFP
ILLVAPTGRAAKRMSETTGLPAMTIHRLLGWKGESFEHDQDNPVRGKMIIIDEMSMVDVWLANQLFRCLPKDINVVMVGD
PDQLPSVGPGNVLFDMLESNVIPVVQLTEIYRQAEESSIIRLAHDIRAGKVPQDLLAPTQDRRFFTTSPQNVVEVVKQIC
SSSVNKGYTAKDIQVLAPVYKGVAGVNHINEELQLLFNPPSDQKREVTFGETVFRVKDKVLQLVNNADEQVFNGDMGEVV
AIFRPTENEENEEQLVVSFEGREVVYRRSQYHQLTLAYCCSVHKSQGSEFPIVILPLVRNYYRMLRRKLIYTGVTRSKSF
LLMCGDPDAFRIAVQNDEEGIRYSYLQDRLRLYG

Nucleotide


Download         Length: 2265 bp        

>NTDB_id=423105 GOP56_RS22380 WP_096887001.1 5183446..5185710(+) (recD2) [Brevibacillus sp. 7WMA2]
GTGCAACAACAGGCGCTCCCGTTGTTTCGTGAGACCTTTATCCGAGGACAAGTAAAACACGAAATTTTTTATAACGAAGA
GAACTGGTATGCCATCATTCGTTTTAAAGTGGAAGAGACAACGGAACCGATTAAAGATAAAGAAGTCATTGTTGTAGGGC
ATTTTCCGCGTCCTCACGAGGATGAGACGTATACCTTTTATGGTGAGTGGAAAGATCATCCTAAATACGGAAAGCAGTAT
GTGGCTGAACGTTACGAGCGTGAAACACCAAAAACCAAATCGGGTGTTGAAAAGTATTTAGCAAGTGGACTTTTTAGTGG
GATTGGTAAAAAGCTAGCAAAGCGGATCGTGGAACATTTAGGAGTCGATGCACTTACCATCATTGCTGAAAATCCTGACG
ATTTAGCCGCTATTCCAGGGATCTCTCCTAAACGCGCTAAGCAAATCTATGAATCCGTCCTAGAGCATCAATCTTTAGAA
CGTACCATGGTTTTCTTATACGAATTTGGAATTGGCGTTCATTTAGCTTTACGTATTTATCAAGCCTATAAGCATAATAC
CATGACTGTATTGACAGAAACTCCATATAAGCTGATTGAGGATGTGCAAGGCATCGGGTTTAAACGTGCAGACGAGATTG
CCCTATCCACAGGAATTGCGGCCTCGTCCCAGGAACGAGTGATGGCAGCATGCCTGTATGTTTTACAAGAAGCCGGTTAT
AGTGAGGGGCATGTATATTTTCCCCATGAAGAATTAATCGCGCGGGCGATTTCGCTATTAACGGAATGCGGCGGACACGT
TTTCGAGGCAGAGGATGTAAAGGGCGCGATTGAACAATTAGTAATGGATAACAAAGTACACTGGGAGGAAGAGCGTGTTT
ATCTTCCGTCCTTGTTTTTTGCAGAGATTGGTCTGGCCAAACGACTTCATTATTTTGCCTCAAGAGAAAATCCTGATAGC
TATCCGGCATCTGAGTTTTACCAAGCGATCGGAAAAGTAGAGGAAGAATTGGGGATTAGCTATGCATCTAAACAGAGAGA
AGCAGTAGAAAAAGCAATGGATTCGGGACTAATGCTACTGACTGGAGGACCTGGTACGGGTAAAACAACAGTCATTAGGG
GAATTTGCCATGTTTTTGCAAATTTGCAGGGAATTAGTTTGGACATGAAGAAATATGACACACAAGATAATCCTTTTCCT
ATTTTACTGGTAGCTCCTACTGGTAGGGCAGCAAAGCGTATGTCTGAGACAACAGGATTGCCAGCGATGACGATTCATCG
TCTTCTTGGTTGGAAAGGTGAGAGCTTTGAACACGATCAAGATAACCCGGTTCGCGGCAAAATGATTATTATTGATGAAA
TGTCGATGGTAGACGTTTGGCTAGCCAATCAGTTATTCCGCTGTCTCCCGAAGGATATAAATGTTGTGATGGTAGGAGAC
CCTGATCAATTGCCTTCTGTAGGTCCAGGAAATGTTTTGTTTGATATGCTGGAGTCCAATGTGATTCCGGTTGTCCAATT
GACGGAGATTTATCGGCAGGCAGAGGAATCCTCCATTATTCGATTAGCTCATGACATTCGGGCGGGAAAAGTACCACAAG
ATTTACTTGCTCCAACCCAGGATCGGAGATTTTTCACAACTTCGCCACAAAATGTTGTTGAAGTTGTGAAACAAATCTGC
TCCAGTTCCGTAAATAAAGGATATACAGCAAAAGATATACAGGTTCTTGCCCCCGTATACAAAGGGGTAGCTGGTGTAAA
TCACATCAATGAAGAGCTGCAGCTTCTATTCAACCCGCCTTCGGATCAGAAGCGGGAGGTAACCTTTGGTGAAACGGTTT
TTCGGGTAAAAGACAAGGTACTTCAATTGGTAAATAATGCGGACGAGCAGGTATTCAACGGAGACATGGGTGAAGTCGTT
GCTATATTTCGTCCTACAGAAAATGAGGAAAATGAAGAGCAGCTAGTGGTGTCCTTTGAAGGACGAGAGGTTGTATATCG
TCGATCACAGTATCACCAGCTTACTCTGGCTTACTGTTGCTCGGTGCACAAATCACAAGGCAGTGAATTTCCAATTGTTA
TTTTACCTTTAGTGCGTAACTATTATCGTATGTTACGCAGAAAATTAATTTACACGGGTGTAACACGTAGCAAGTCATTT
TTGCTAATGTGTGGCGATCCAGATGCTTTTCGCATTGCGGTGCAAAATGATGAGGAAGGAATTCGTTATAGCTACTTGCA
AGATCGGCTACGTTTGTACGGATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix domain (HHH_5)

(106-151)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-719)

AAA domain (AAA_30)

(341-541)

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.604

100

0.499

Multiple sequence alignment