Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GMA19_RS11670 Genome accession   NZ_CP048793
Coordinates   2623452..2625305 (+) Length   617 a.a.
NCBI ID   WP_013310358.1    Uniprot ID   -
Organism   Paenibacillus polymyxa E681 isolate     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2618452..2630305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GMA19_RS11645 (GMA19_02396) - 2618700..2619581 (+) 882 WP_317890379.1 LysR family transcriptional regulator -
  GMA19_RS11650 (GMA19_02397) - 2619856..2620380 (+) 525 Protein_2293 NADPH dehydrogenase -
  GMA19_RS25075 (GMA19_02398) - 2620491..2620628 (+) 138 WP_411860686.1 hypothetical protein -
  GMA19_RS25080 - 2620666..2620881 (+) 216 WP_411860689.1 hypothetical protein -
  GMA19_RS11660 (GMA19_02400) - 2621211..2621621 (+) 411 WP_013310356.1 MarR family winged helix-turn-helix transcriptional regulator -
  GMA19_RS11665 (GMA19_02401) rcrP 2621696..2623459 (+) 1764 WP_013310357.1 ABC transporter ATP-binding protein Regulator
  GMA19_RS11670 (GMA19_02402) rcrQ 2623452..2625305 (+) 1854 WP_013310358.1 ABC transporter ATP-binding protein Regulator
  GMA19_RS11675 (GMA19_02403) - 2625426..2625734 (+) 309 WP_013310359.1 hypothetical protein -
  GMA19_RS25085 - 2626325..2626958 (+) 634 Protein_2300 IS5 family transposase -
  GMA19_RS11685 - 2626973..2627395 (-) 423 Protein_2301 YczE/YyaS/YitT family protein -
  GMA19_RS11690 (GMA19_02405) - 2627509..2627961 (+) 453 WP_013310363.1 MarR family winged helix-turn-helix transcriptional regulator -
  GMA19_RS11695 (GMA19_02406) - 2627987..2628505 (+) 519 WP_013310364.1 GNAT family N-acetyltransferase -
  GMA19_RS24515 - 2628730..2628867 (+) 138 Protein_2304 QacE family quaternary ammonium compound efflux SMR transporter -
  GMA19_RS11700 (GMA19_02407) - 2628984..2629190 (+) 207 WP_043882192.1 hypothetical protein -
  GMA19_RS11705 (GMA19_02408) - 2629322..2629609 (-) 288 Protein_2306 hypothetical protein -

Sequence

Protein


Download         Length: 617 a.a.        Molecular weight: 67974.43 Da        Isoelectric Point: 6.0299

>NTDB_id=423005 GMA19_RS11670 WP_013310358.1 2623452..2625305(+) (rcrQ) [Paenibacillus polymyxa E681 isolate]
MDNKNEHTVDSQQMKMNQRGPMGNGPAGGSGAGEKANNFKKTISQLVSYSKAYVPMIILAMVLALVGSTLNVIGPDKLSD
IANLIQEGIVTGIDVSAVQKIVLVLALLYGFGLIFNYSQGFITATVSQRLTKKMRTELSRKIDHMPLKYFDSTSYGNVLS
RVTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTVTGIIATLIGFCLMSVIMKHSQRYFVAQQAELGQINGH
IEETYAGHNVVKVYNGEQAAKEVFHGINSRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVVGALLVNQQTITIGTIVA
FMVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADERHKTIKLDTAKGDVEFKHVRFGYNTDRMIIKDFSMK
AEAGQKIAIVGPTGAGKTTLVNLLMRFYELNDGEIYIDGTPISQLTRENIHELFCMVLQDTWLFEGTIRDNIVFSKDHVT
DEQVETACKAVGLHSFIKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDSPMLILDEATSSVDTRTELLIQQAMDQLT
VGKTSFVIAHRLSTIKNADLILVMKDGDIIEMGNHEELLAKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1854 bp        

>NTDB_id=423005 GMA19_RS11670 WP_013310358.1 2623452..2625305(+) (rcrQ) [Paenibacillus polymyxa E681 isolate]
ATGGATAATAAGAATGAACACACCGTCGACAGCCAGCAAATGAAAATGAATCAGCGAGGTCCCATGGGTAATGGACCCGC
GGGGGGCAGTGGTGCTGGTGAAAAAGCGAATAATTTTAAAAAGACCATCAGCCAGCTTGTATCCTACAGCAAGGCCTATG
TGCCTATGATTATACTAGCTATGGTACTGGCCCTGGTCGGCTCCACCCTCAACGTGATTGGCCCCGATAAGCTCAGTGAT
ATTGCCAACCTGATTCAGGAAGGAATCGTGACCGGGATTGATGTAAGTGCTGTTCAGAAGATTGTTCTTGTATTGGCGCT
TTTATATGGATTTGGTCTTATTTTTAACTATTCCCAGGGCTTCATTACGGCAACCGTCTCACAGCGTCTTACAAAGAAGA
TGCGGACAGAGCTGTCTCGAAAAATCGATCATATGCCTTTGAAGTATTTTGACTCTACGAGTTACGGTAATGTGCTTAGC
CGTGTAACCAACGATGTCGATACCATTGGACAAACGTTAAACAACAGTCTCGGCACGCTTGTCAGTGCGCTGGCTACCTT
CGTGGGCGCCTTGATTATGATGCTGTATACGAACTGGATCATGACCGTTACCGGAATTATAGCTACGCTGATCGGCTTTT
GCCTGATGAGCGTGATTATGAAACATTCACAGAGATACTTTGTAGCACAGCAAGCGGAGCTTGGCCAGATCAACGGTCAT
ATCGAAGAAACTTATGCTGGTCATAACGTAGTCAAGGTATATAATGGGGAACAAGCAGCCAAGGAAGTGTTTCATGGCAT
TAACAGCCGCTTATATACAAATGCATGGAAGTCCCAATTCATGTCTGGCCTGATGATGCCAGTCATGATGTTCATTGGGA
ATTTTGGTTATGTCGCGGTTTGTGTCGTGGGAGCTTTGCTGGTCAACCAACAGACTATAACTATCGGAACTATTGTCGCC
TTCATGGTGTATATTCGTCTGTTTACACAGCCCTTGTCGCAGCTGGCACAGGCCGCAACCAATCTGCAGTCGGCGGCTGC
CGCCAGTGAACGTGTATTCGAATTTCTGGGTGAAGAAGAATTGGCAGATGAGCGTCACAAGACCATAAAGCTGGACACCG
CCAAAGGGGATGTCGAATTCAAACATGTCCGTTTCGGCTATAATACAGATCGTATGATTATCAAGGACTTCTCCATGAAA
GCTGAAGCTGGTCAGAAAATTGCCATTGTTGGTCCGACAGGTGCCGGTAAGACCACGCTCGTGAATTTGCTCATGCGGTT
TTATGAGCTGAACGATGGAGAAATCTACATTGACGGAACCCCGATCAGCCAATTAACGCGTGAGAATATTCATGAATTAT
TCTGTATGGTGCTTCAGGATACCTGGCTGTTCGAAGGAACGATTCGTGACAATATCGTCTTTTCCAAAGATCATGTTACC
GATGAGCAGGTGGAAACTGCATGTAAAGCGGTGGGGCTGCACAGCTTCATTAAAACACTGCCGCAGGGCTATGATACAGT
GCTGGACGACAAAGCCAATCTATCCGCCGGTCAAAAGCAATTGATTACCATTGCAAGAGCGATGATTGAAGATTCACCCA
TGCTCATTTTGGATGAGGCCACAAGCTCGGTTGATACGCGTACGGAATTGCTGATTCAACAAGCGATGGACCAGCTGACT
GTGGGGAAAACCTCCTTTGTGATTGCTCACCGACTTTCGACGATCAAGAATGCGGATCTGATTCTGGTCATGAAGGACGG
TGACATTATCGAAATGGGTAACCATGAGGAATTGTTGGCTAAAGGCGGCTTCTATGCCGATCTATACAATAGTCAGTTTG
AACATGCATCTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(58-332)

ABC transporter (ABC_tran)

(395-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.499

93.517

0.528

Multiple sequence alignment