Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   G3T50_RS06665 Genome accession   NZ_CP048771
Coordinates   1278108..1278623 (-) Length   171 a.a.
NCBI ID   WP_167842899.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZS007     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1273108..1283623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T50_RS06650 (G3T50_06625) - 1273205..1275022 (-) 1818 WP_167842896.1 motility associated factor glycosyltransferase family protein -
  G3T50_RS06655 (G3T50_06630) - 1275019..1276845 (-) 1827 WP_167842897.1 motility associated factor glycosyltransferase family protein -
  G3T50_RS06660 (G3T50_06635) - 1276857..1278107 (-) 1251 WP_167842898.1 DUF2920 family protein -
  G3T50_RS06665 (G3T50_06640) ctsG 1278108..1278623 (-) 516 WP_167842899.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  G3T50_RS06670 (G3T50_06645) tsaD 1278624..1279631 (-) 1008 WP_167842900.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  G3T50_RS06675 (G3T50_06650) - 1279628..1281022 (-) 1395 WP_057096244.1 M99 family carboxypeptidase catalytic domain-containing protein -
  G3T50_RS06680 (G3T50_06655) dxr 1281024..1282094 (-) 1071 WP_167842901.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  G3T50_RS06685 (G3T50_06660) cdsA 1282091..1282816 (-) 726 WP_052782285.1 phosphatidate cytidylyltransferase -
  G3T50_RS06690 (G3T50_06665) - 1282825..1283163 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18691.46 Da        Isoelectric Point: 7.1360

>NTDB_id=422866 G3T50_RS06665 WP_167842899.1 1278108..1278623(-) (ctsG) [Campylobacter jejuni strain ZS007]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLTGGR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=422866 G3T50_RS06665 WP_167842899.1 1278108..1278623(-) (ctsG) [Campylobacter jejuni strain ZS007]
ATGAGAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTGGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAACAGGAGGAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.529

99.415

0.93

Multiple sequence alignment