Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | IFJ78_RS21945 | Genome accession | NZ_CP061779 |
| Coordinates | 4673190..4673615 (+) | Length | 141 a.a. |
| NCBI ID | WP_003094721.1 | Uniprot ID | G3XD43 |
| Organism | Pseudomonas aeruginosa strain ZBX-P12 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 4668190..4678615
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IFJ78_RS21930 (IFJ78_21925) | pilX | 4668754..4669341 (+) | 588 | WP_003112826.1 | type 4a pilus minor pilin PilX | - |
| IFJ78_RS21935 (IFJ78_21930) | pilY1 | 4669353..4672844 (+) | 3492 | WP_003102607.1 | type 4a pilus biogenesis protein PilY1 | - |
| IFJ78_RS21940 (IFJ78_21935) | pilY2 | 4672846..4673193 (+) | 348 | WP_003161774.1 | type 4a fimbrial biogenesis protein PilY2 | - |
| IFJ78_RS21945 (IFJ78_21940) | comF | 4673190..4673615 (+) | 426 | WP_003094721.1 | type 4a pilus minor pilin PilE | Machinery gene |
| IFJ78_RS21950 (IFJ78_21945) | ispH | 4673662..4674606 (-) | 945 | WP_003134939.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| IFJ78_RS21955 (IFJ78_21950) | fkpB | 4674692..4675132 (-) | 441 | WP_003161775.1 | FKBP-type peptidyl-prolyl cis-trans isomerase | - |
| IFJ78_RS21960 (IFJ78_21955) | lspA | 4675125..4675634 (-) | 510 | WP_003102615.1 | signal peptidase II | - |
| IFJ78_RS21965 (IFJ78_21960) | ileS | 4675627..4678458 (-) | 2832 | WP_003102617.1 | isoleucine--tRNA ligase | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15279.30 Da Isoelectric Point: 10.0198
>NTDB_id=422807 IFJ78_RS21945 WP_003094721.1 4673190..4673615(+) (comF) [Pseudomonas aeruginosa strain ZBX-P12]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR
Nucleotide
Download Length: 426 bp
>NTDB_id=422807 IFJ78_RS21945 WP_003094721.1 4673190..4673615(+) (comF) [Pseudomonas aeruginosa strain ZBX-P12]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAACTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACACCCACCAGCACTACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAACTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACACCCACCAGCACTACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Acinetobacter baylyi ADP1 |
42.188 |
90.78 |
0.383 |