Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   G3T47_RS06780 Genome accession   NZ_CP048761
Coordinates   1299432..1299947 (-) Length   171 a.a.
NCBI ID   WP_136696329.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZS004     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1294432..1304947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T47_RS06765 (G3T47_06765) - 1294538..1296358 (-) 1821 WP_167844484.1 motility associated factor glycosyltransferase family protein -
  G3T47_RS06770 (G3T47_06770) - 1296355..1298178 (-) 1824 WP_167844485.1 motility associated factor glycosyltransferase family protein -
  G3T47_RS06775 (G3T47_06775) - 1298190..1299432 (-) 1243 Protein_1324 DUF2920 family protein -
  G3T47_RS06780 (G3T47_06780) ctsG 1299432..1299947 (-) 516 WP_136696329.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  G3T47_RS06785 (G3T47_06785) tsaD 1299948..1300955 (-) 1008 WP_167844486.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  G3T47_RS06790 (G3T47_06790) - 1300952..1302346 (-) 1395 WP_167844487.1 M99 family carboxypeptidase catalytic domain-containing protein -
  G3T47_RS06795 (G3T47_06795) dxr 1302348..1303418 (-) 1071 WP_002884178.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  G3T47_RS06800 (G3T47_06800) cdsA 1303415..1304140 (-) 726 WP_057032776.1 phosphatidate cytidylyltransferase -
  G3T47_RS06805 (G3T47_06805) - 1304149..1304487 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18620.57 Da        Isoelectric Point: 7.8497

>NTDB_id=422705 G3T47_RS06780 WP_136696329.1 1299432..1299947(-) (ctsG) [Campylobacter jejuni strain ZS004]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKKCLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFISSSSSKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=422705 G3T47_RS06780 WP_136696329.1 1299432..1299947(-) (ctsG) [Campylobacter jejuni strain ZS004]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGTACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAAAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTATAAGCTCTTCTAGTAGCAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936

Multiple sequence alignment