Detailed information    

insolico Bioinformatically predicted

Overview


Name   proC   Type   Machinery gene
Locus tag   G3T48_RS05170 Genome accession   NZ_CP048760
Coordinates   996449..997180 (+) Length   243 a.a.
NCBI ID   WP_044257985.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZS005     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 991449..1002180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T48_RS05140 (G3T48_05145) rpsF 991592..991969 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  G3T48_RS05145 (G3T48_05150) ssb 991978..992529 (+) 552 WP_002921394.1 single-stranded DNA-binding protein -
  G3T48_RS05150 (G3T48_05155) rpsR 992540..992800 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  G3T48_RS05155 (G3T48_05160) lon 992860..995235 (-) 2376 WP_002853487.1 endopeptidase La -
  G3T48_RS05160 (G3T48_05165) - 995252..995899 (-) 648 WP_052793785.1 outer membrane protein assembly factor BamD -
  G3T48_RS05165 (G3T48_05170) fliW 996060..996449 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  G3T48_RS05170 (G3T48_05175) proC 996449..997180 (+) 732 WP_044257985.1 pyrroline-5-carboxylate reductase Machinery gene
  G3T48_RS05175 (G3T48_05180) ctsT 997177..997479 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene
  G3T48_RS05180 (G3T48_05185) - 997476..998138 (+) 663 WP_052793783.1 hypothetical protein -
  G3T48_RS05185 (G3T48_05190) - 998135..998587 (+) 453 WP_167840649.1 hypothetical protein -
  G3T48_RS05190 (G3T48_05195) hemD 998584..999213 (-) 630 WP_002936697.1 uroporphyrinogen-III synthase -
  G3T48_RS05195 (G3T48_05200) thiE 999191..999823 (-) 633 WP_126207892.1 thiamine phosphate synthase -
  G3T48_RS05200 (G3T48_05205) thiD 999813..1000625 (-) 813 WP_052781897.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  G3T48_RS05205 (G3T48_05210) - 1000622..1001308 (-) 687 WP_167840650.1 endonuclease III domain-containing protein -
  G3T48_RS05210 (G3T48_05215) - 1001305..1002066 (-) 762 WP_126204110.1 ATP-binding protein -

Sequence


Protein


Download         Length: 243 a.a.        Molecular weight: 26589.98 Da        Isoelectric Point: 8.5934

>NTDB_id=422671 G3T48_RS05170 WP_044257985.1 996449..997180(+) (proC) [Campylobacter jejuni strain ZS005]
MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALTKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQMLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTIKGIKILEQKGIRGSFFEAINAS
SAK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=422671 G3T48_RS05170 WP_044257985.1 996449..997180(+) (proC) [Campylobacter jejuni strain ZS005]
ATGCTCTATATACTTGCAAATGGATCTATGGCAACAGCCTTAGCCTATGGGTTAAAAGATGATTATGAAATTTGTATAGT
AGGAAGAAGTATAGAAAAACTTCAAGCCCTCACCAAAGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAAG
GTAAAGATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAAATATTGCTCAAATGCTAAAAGGACAAGCACGTATCTTA
ATCTCTGTTTTAGCCAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTTAGAATAATACCCAATAC
AGCAGCTAAATACAAGGCTTCAACCACACCATATATACTTAAAAACTCTCATTTTGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGCTCGGCTTATAAATTAGATAATGAAATACAAATGAATGCAGCTATGGCGATTAGCGGCTGCGCTCCTGCT
TTTTTAGCACTTATAGCAGAAAGCATTGCTAATGCTGGAGTTTATGAAGGTTTATCAAAAGAACTTAGTCTTAATCTTAC
GCGCTCTTTATTTAAAAGCTCTAGTGCTTTACTAGAACATGAACATCCAGCTATTATCAAAGAAAATATTTGCTCCCCTG
GCGGAGTTACAATAAAAGGCATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGC
AGCGCCAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

99.177

100

0.992


Multiple sequence alignment