Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   IFJ79_RS04120 Genome accession   NZ_CP061778
Coordinates   885684..886208 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain ZBX-P13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 880684..891208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IFJ79_RS04105 (IFJ79_04100) aroB 881812..882918 (-) 1107 WP_033989914.1 3-dehydroquinate synthase -
  IFJ79_RS04110 (IFJ79_04105) aroK 882968..883486 (-) 519 WP_003095833.1 shikimate kinase AroK -
  IFJ79_RS04115 (IFJ79_04110) pilQ 883498..885630 (-) 2133 WP_033989912.1 type 4a pilus secretin PilQ Machinery gene
  IFJ79_RS04120 (IFJ79_04115) comL/pilP 885684..886208 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  IFJ79_RS04125 (IFJ79_04120) pilO 886205..886828 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  IFJ79_RS04130 (IFJ79_04125) pilN 886825..887421 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  IFJ79_RS04135 (IFJ79_04130) pilM 887421..888485 (-) 1065 WP_108720490.1 type IV pilus assembly protein PilM Machinery gene
  IFJ79_RS04140 (IFJ79_04135) - 888670..891141 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=422664 IFJ79_RS04120 WP_003116136.1 885684..886208(-) (comL/pilP) [Pseudomonas aeruginosa strain ZBX-P13]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=422664 IFJ79_RS04120 WP_003116136.1 885684..886208(-) (comL/pilP) [Pseudomonas aeruginosa strain ZBX-P13]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAC
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362