Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   G3T49_RS02975 Genome accession   NZ_CP048756
Coordinates   584409..584924 (-) Length   171 a.a.
NCBI ID   WP_060809752.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZS006     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 579409..589924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T49_RS02960 (G3T49_02945) - 579515..581329 (-) 1815 WP_167843207.1 motility associated factor glycosyltransferase family protein -
  G3T49_RS02965 (G3T49_02950) - 581326..583149 (-) 1824 WP_167843208.1 motility associated factor glycosyltransferase family protein -
  G3T49_RS02970 (G3T49_02955) - 583159..584409 (-) 1251 WP_167843209.1 DUF2920 family protein -
  G3T49_RS02975 (G3T49_02960) ctsG 584409..584924 (-) 516 WP_060809752.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  G3T49_RS02980 (G3T49_02965) tsaD 584925..585932 (-) 1008 WP_071311303.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  G3T49_RS02985 (G3T49_02970) - 585929..587323 (-) 1395 WP_167843210.1 M99 family carboxypeptidase catalytic domain-containing protein -
  G3T49_RS02990 (G3T49_02975) dxr 587325..588395 (-) 1071 WP_002869325.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  G3T49_RS02995 (G3T49_02980) cdsA 588392..589117 (-) 726 WP_002869324.1 phosphatidate cytidylyltransferase -
  G3T49_RS03000 (G3T49_02985) - 589126..589464 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18680.53 Da        Isoelectric Point: 6.4682

>NTDB_id=422642 G3T49_RS02975 WP_060809752.1 584409..584924(-) (ctsG) [Campylobacter jejuni strain ZS006]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGTKEVNFRVGDDKECLKLLFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=422642 G3T49_RS02975 WP_060809752.1 584409..584924(-) (ctsG) [Campylobacter jejuni strain ZS006]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATCGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTAGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTCTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATCGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942

Multiple sequence alignment