Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IFJ80_RS26065 Genome accession   NZ_CP061777
Coordinates   5514539..5514964 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain ZBX-P23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5509539..5519964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IFJ80_RS26050 (IFJ80_26045) pilX 5510103..5510690 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  IFJ80_RS26055 (IFJ80_26050) pilY1 5510702..5514193 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  IFJ80_RS26060 (IFJ80_26055) pilY2 5514195..5514542 (+) 348 WP_003161774.1 type 4a fimbrial biogenesis protein PilY2 -
  IFJ80_RS26065 (IFJ80_26060) comF 5514539..5514964 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  IFJ80_RS26070 (IFJ80_26065) ispH 5515011..5515955 (-) 945 WP_003134939.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IFJ80_RS26075 (IFJ80_26070) fkpB 5516041..5516481 (-) 441 WP_003161775.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  IFJ80_RS26080 (IFJ80_26075) lspA 5516474..5516983 (-) 510 WP_003102615.1 signal peptidase II -
  IFJ80_RS26085 (IFJ80_26080) ileS 5516976..5519807 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=422616 IFJ80_RS26065 WP_003094721.1 5514539..5514964(+) (comF) [Pseudomonas aeruginosa strain ZBX-P23]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=422616 IFJ80_RS26065 WP_003094721.1 5514539..5514964(+) (comF) [Pseudomonas aeruginosa strain ZBX-P23]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAACTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACACCCACCAGCACTACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383