Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   G3T51_RS07420 Genome accession   NZ_CP048732
Coordinates   1501322..1503712 (+) Length   796 a.a.
NCBI ID   WP_107602339.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain NWAF26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1496322..1508712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T51_RS07400 sal(A) 1496629..1498254 (+) 1626 WP_107610113.1 ABC-F type ribosomal protection protein Sal(A) -
  G3T51_RS07405 - 1498314..1499462 (+) 1149 WP_048539658.1 cysteine desulfurase family protein -
  G3T51_RS07410 mnmA 1499455..1500564 (+) 1110 WP_048539659.1 tRNA 2-thiouridine(34) synthase MnmA -
  G3T51_RS07415 - 1500651..1501319 (+) 669 WP_107602338.1 tetratricopeptide repeat protein -
  G3T51_RS07420 recD2 1501322..1503712 (+) 2391 WP_107602339.1 ATP-dependent RecD-like DNA helicase Machinery gene
  G3T51_RS07425 alaS 1503962..1506592 (+) 2631 WP_048539662.1 alanine--tRNA ligase -
  G3T51_RS07430 - 1506660..1506929 (+) 270 WP_185160421.1 IreB family regulatory phosphoprotein -
  G3T51_RS07435 ruvX 1506922..1507350 (+) 429 WP_025904238.1 Holliday junction resolvase RuvX -
  G3T51_RS07440 - 1507370..1507675 (+) 306 WP_025904237.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90422.71 Da        Isoelectric Point: 4.6800

>NTDB_id=422574 G3T51_RS07420 WP_107602339.1 1501322..1503712(+) (recD2) [Mammaliicoccus sciuri strain NWAF26]
MENLSLFDLSHVKGEVIRILFQNSDNYYTVIKVDVMDSNEDFDQEVTIVGYLPQIVEGETYLFKGKVTNHPKYGKQLQAE
TFEKELPQTKQGVIHYLSSDLFKGIGKKTAETIVDKLGEDALQKIINDPDVLKEIPKLNKQKRDTIAESIRENQAIERIM
IKLNELGFGPKLAMAIYQFYKEETLNIIKQSPYRLVMDINGIGFQRADQIAEQVGISKDHHDRLVAGVSYFLDQQSLQNG
HTFLPVDILVNGAYELLNHNQPEVVNKDQINGVIIEMSEENKLIIENDNCFLPSLYYSEAKSVQIIHRLYQHQDELKEIE
KSDLQLHIGQIEDMNDVSYADGQKLALETAINHKMMLLTGGPGTGKTTVIRGICELYSEIHGVSLNYDDYQEGTDFPIVL
AAPTGRAAKRLSESTGLEAMTIHRLIGWSKDTQPDDVLDNDIHAHLIILDEMSMVDTWLMYQFLRAVPDYAQIIFVGDED
QLPSVGPGQIFKDLIDSKVIPRVNLTEVYRQQEGSSIIDLAHKIKNGLPVSINEKHHDRSFIPCSSNQIATVVEKVVQGA
VNKGYNMQDIQVLAPIYRGPAGINKLNELLQDILNPKDKDTRFLQYGDIEYRENDKVLQLINRPDDNVFNGDIGVVTGVY
KAEENALGKDVVIVDYEGNDITYTKQDLSEITHAYCCSIHKSQGSEFPIVIMPIVRQYFRMLQKNILYTGLTRAKKSLVV
CGEEQAFNQGIQTLGHERMTSFDTKLKMYFDTDVETDTESETETIQTKHIILTEDNMFEIDPMINMNDKSPYDFMK

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=422574 G3T51_RS07420 WP_107602339.1 1501322..1503712(+) (recD2) [Mammaliicoccus sciuri strain NWAF26]
TTGGAAAACTTATCTTTATTTGATCTTTCACATGTTAAAGGTGAAGTTATTAGAATTCTTTTTCAAAACAGTGATAACTA
TTATACCGTTATTAAAGTCGATGTGATGGATTCAAATGAAGATTTTGATCAAGAAGTCACAATTGTTGGTTACTTACCTC
AAATAGTTGAAGGAGAAACGTACCTTTTCAAAGGTAAAGTGACAAACCATCCGAAATACGGTAAACAACTACAAGCCGAA
ACATTTGAAAAAGAATTACCACAAACAAAACAAGGTGTTATCCATTACTTATCGAGTGATTTATTTAAAGGTATTGGTAA
GAAAACAGCAGAAACAATCGTGGACAAACTAGGTGAAGATGCACTTCAGAAAATTATAAATGACCCAGATGTCCTTAAAG
AAATACCTAAACTCAACAAGCAAAAAAGAGATACGATTGCAGAATCAATACGTGAGAATCAAGCCATTGAACGTATTATG
ATTAAACTTAATGAACTTGGTTTCGGTCCGAAACTCGCGATGGCTATTTATCAATTTTATAAAGAAGAAACACTTAATAT
TATTAAACAATCTCCATATCGTTTGGTGATGGATATAAATGGTATAGGGTTTCAAAGAGCTGACCAAATAGCCGAACAAG
TTGGAATTTCAAAAGATCATCATGATCGACTTGTAGCGGGTGTCAGTTACTTTTTAGACCAGCAATCATTACAGAATGGC
CACACATTTTTACCTGTTGATATATTGGTTAACGGTGCATATGAATTGTTAAATCATAATCAACCTGAAGTTGTAAATAA
AGATCAGATTAATGGTGTCATTATAGAAATGAGTGAGGAAAATAAACTTATTATCGAAAATGATAATTGTTTTTTACCTT
CACTTTATTATTCAGAAGCGAAAAGTGTGCAAATCATTCATAGACTTTATCAACATCAAGATGAACTTAAAGAAATTGAG
AAAAGTGATCTTCAATTACACATTGGTCAAATTGAAGATATGAATGATGTTTCATATGCAGATGGACAAAAATTAGCGTT
AGAAACAGCCATTAATCATAAAATGATGCTTTTAACAGGTGGACCTGGAACAGGTAAGACAACAGTTATTCGAGGCATTT
GTGAGTTGTATTCTGAAATACATGGTGTGAGTTTAAATTATGATGATTATCAAGAAGGAACAGACTTTCCAATTGTATTA
GCAGCACCGACTGGTCGAGCAGCAAAACGTTTAAGTGAATCAACAGGACTAGAAGCGATGACGATTCATAGATTAATTGG
TTGGAGTAAAGATACGCAACCGGATGATGTGTTAGATAATGATATTCATGCCCATTTAATCATTCTAGATGAAATGTCTA
TGGTAGATACATGGTTAATGTATCAATTTTTAAGAGCAGTCCCTGACTATGCCCAAATCATATTTGTAGGTGACGAAGAT
CAATTACCATCAGTTGGTCCAGGTCAGATTTTTAAAGATTTAATTGATTCTAAAGTGATACCGAGAGTGAACTTAACAGA
AGTTTATAGACAACAAGAAGGATCATCCATCATAGATTTAGCGCATAAAATAAAAAATGGATTGCCTGTTTCTATCAATG
AAAAACATCACGACCGCTCATTTATTCCGTGCAGTAGTAATCAAATTGCGACAGTCGTAGAAAAGGTTGTACAAGGTGCG
GTTAATAAAGGGTATAATATGCAAGATATTCAAGTGCTAGCCCCAATATATCGTGGACCAGCTGGTATTAATAAATTGAA
TGAATTATTGCAAGATATATTAAATCCGAAAGATAAAGATACAAGATTTCTTCAATATGGAGATATTGAATATCGTGAAA
ATGATAAAGTACTTCAACTTATAAATCGTCCAGATGATAATGTATTTAATGGTGATATTGGTGTAGTAACAGGTGTTTAT
AAAGCAGAAGAAAATGCACTTGGTAAAGATGTTGTCATTGTGGATTATGAAGGGAATGACATAACATACACTAAACAAGA
TTTATCAGAAATTACACATGCTTATTGCTGTTCAATTCATAAATCACAAGGCTCGGAATTCCCAATAGTCATCATGCCTA
TCGTCAGACAATACTTTAGAATGTTACAAAAAAACATTCTATATACTGGACTAACACGTGCGAAAAAGTCACTTGTCGTG
TGCGGTGAAGAGCAAGCCTTTAACCAAGGTATCCAAACACTAGGTCATGAGAGAATGACATCGTTTGATACGAAATTAAA
AATGTATTTCGATACTGATGTTGAAACGGATACTGAGTCTGAAACAGAAACTATACAAACGAAACATATTATTTTAACTG
AAGATAATATGTTTGAAATTGATCCGATGATTAATATGAATGATAAATCGCCATATGATTTTATGAAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)

AAA domain (AAA_30)

(339-545)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-644)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.627

100

0.501

Multiple sequence alignment