Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   G3U99_RS03670 Genome accession   NZ_CP048693
Coordinates   782258..782962 (-) Length   234 a.a.
NCBI ID   WP_165579460.1    Uniprot ID   -
Organism   Vibrio coralliilyticus OCN008     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 777258..787962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3U99_RS03650 (G3U99_03640) recG 777872..779950 (+) 2079 WP_021458540.1 ATP-dependent DNA helicase RecG -
  G3U99_RS03655 (G3U99_03645) cysQ 780043..780870 (-) 828 WP_019276594.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  G3U99_RS03660 (G3U99_03650) nudE 780897..781445 (-) 549 WP_006957191.1 ADP compounds hydrolase NudE -
  G3U99_RS03665 (G3U99_03655) nfuA 781577..782164 (-) 588 WP_021458365.1 Fe-S biogenesis protein NfuA -
  G3U99_RS03670 (G3U99_03660) comF 782258..782962 (-) 705 WP_165579460.1 ComF family protein Machinery gene
  G3U99_RS03675 (G3U99_03665) bioH 783021..783818 (+) 798 WP_021458363.1 pimeloyl-ACP methyl ester esterase BioH -
  G3U99_RS03680 (G3U99_03670) - 783928..784398 (+) 471 WP_006957199.1 hypothetical protein -
  G3U99_RS03685 (G3U99_03675) - 784471..786798 (-) 2328 WP_021458362.1 Tex family protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 27167.70 Da        Isoelectric Point: 8.5366

>NTDB_id=422385 G3U99_RS03670 WP_165579460.1 782258..782962(-) (comF) [Vibrio coralliilyticus OCN008]
MLTDWIKKHTAYLLPSHCDLCQMEIGAQAAHPLFCCFCLRRFAPVPRCRRCGLVTPEYVEMCGECLVAPPLWTHLYCVGD
YQPPLSSYVHRLKYEGQYWQAKTLSLLLVSRIDTRPDLITFVPLHWRRYCYRGYNQSQHLAWQIGRELGVPCEALFKKKR
ATERQQGMDKKQRKENVRQAFHLRKSINIEHVAIVDDVLTTGSTVHQLCELLLDAGVKTIDIYCICRTPEPSSR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=422385 G3U99_RS03670 WP_165579460.1 782258..782962(-) (comF) [Vibrio coralliilyticus OCN008]
ATGTTAACCGATTGGATTAAGAAACACACAGCCTACCTGTTACCCAGTCATTGCGATTTGTGCCAGATGGAGATCGGAGC
GCAAGCGGCGCACCCCTTATTCTGCTGTTTCTGTCTGCGACGTTTTGCGCCAGTTCCTCGCTGCAGACGATGTGGCTTGG
TGACCCCTGAGTACGTCGAAATGTGTGGGGAATGTTTAGTTGCCCCGCCATTGTGGACGCACTTGTATTGTGTCGGAGAC
TATCAACCGCCGCTATCGAGTTACGTTCACCGACTTAAGTACGAAGGTCAGTACTGGCAGGCTAAAACCTTGTCTTTGCT
GTTGGTGTCACGCATCGACACTCGACCAGACCTGATTACTTTTGTCCCCTTGCACTGGCGTCGTTACTGTTATCGTGGCT
ACAACCAAAGTCAGCATCTGGCATGGCAAATTGGTCGAGAGCTGGGTGTGCCTTGTGAGGCTCTATTTAAGAAAAAGCGT
GCAACGGAAAGGCAACAAGGAATGGATAAAAAGCAGCGTAAGGAGAATGTGCGTCAGGCTTTTCATCTAAGAAAGTCGAT
AAATATTGAGCATGTCGCTATTGTCGATGATGTGCTAACTACAGGCAGTACCGTGCATCAATTGTGTGAATTATTGCTCG
ATGCTGGAGTGAAAACCATTGATATTTATTGCATTTGTCGCACTCCTGAACCTTCTAGCCGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(141-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

50.862

99.145

0.504
  comF Vibrio campbellii strain DS40M4

45.614

97.436

0.444

Multiple sequence alignment